Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03452 ATGCCAGAAAATAGGCAGGTTTTGAAGAATGCTGCTTCTAATCCATCTGGTGATAACATTGAAGAAGCAATTCGGCGTttgaaaatcaataataatCGAGACAGAGATGCTGCGGCTCAATCTATGCCTTATCCGGATCGACCTGGTGAACCTGATTGCTTATATTATTTGAGGACTGGAATGTGTGGTTACGGGAGTAACTGTCGCTATAATCACCCTGCTAATGTTTCACTTGTTCCTCAATATGGTGAAGAACTTCCTGAGAGAGTCGGACAACCTGATTGTGAGTATTTTCTTAAGACAGGAACATGCAAGTATGGATCAACATGTAAATATCATCATCCTAAGGACAGGCGAGGTGCTGCACCCGTAGTATTCAATACTTTAGGTCTTCCCATGCGCCAGGAAGAAAAATCATGTCCCTATTACATGAGAACCGGTTCTTGTAAGTTTGGAGTTGCATGCAAGTTCCATCATCCACAACAGCAGGCTTCCTTTGGAGCTTATCCGGTGGCTGCGTCCCCTCCATCAACAACTGTTACTTCATCAGGTTTTCCATATGCTGGCGGTTTTCCTGCATGGTCAGTGCCGAGAATGTCGTATTTATCTGGGCAGGCCATTCAATCTTATGTGCCTCCTTTTATGCCTTCTTCACAAGGCATTATGCCTGCGCTGAGCTGGAGCAACTACATGGGAAGTATTAGCCCCGCAATGCCTTCTGGTTTTATTGGATCTAATCTTGTCTACGACTACATGAATCCGGCGGCGGGAGAGACACTTTCTGGTGGACAGGTAATGAATTCAACTCTTCCAGATAGACCTGATCAACCAGACTGTAAATACTTTATGAGCACTGGAACATGCAAATATGGTTCTGATTGCAAGTTCCATCATCCTAAAGAAAGAATAGCCCAAACTTTATCGGTTAATCCACTTGGCCTTCCTATGAGACCTGGTAATGCTATATGCTCGTATTACAGAATCTATGGAGTATGCAAGTTTGGTCCAACATGCAAATTTGATCATCCAGTTGTAGCAGCCATCCCTCAAAACTACGGCTTGCCATCACCAACTCTATCGGTATTCGACCCATCTCTCCTTACCAGTCCAAGAAGGCTTTCGACCGTCCAACCAACCGAGACATCTCCATCAAAACAATCATCAACTGACAAGCTTCAACAATCTGATACAAAAGCTGCTACTGAAGATTCATCTAAACAAGCTGACGACACTACATCAAATTCTCGCACACCTTCGTCCGAGTCTTTGCACGAATGA 1278 0.4382 MPENRQVLKNAASNPSGDNIEEAIRRLKINNNRDRDAAAQSMPYPDRPGEPDCLYYLRTGMCGYGSNCRYNHPANVSLVPQYGEELPERVGQPDCEYFLKTGTCKYGSTCKYHHPKDRRGAAPVVFNTLGLPMRQEEKSCPYYMRTGSCKFGVACKFHHPQQQASFGAYPVAASPPSTTVTSSGFPYAGGFPAWSVPRMSYLSGQAIQSYVPPFMPSSQGIMPALSWSNYMGSISPAMPSGFIGSNLVYDYMNPAAGETLSGGQVMNSTLPDRPDQPDCKYFMSTGTCKYGSDCKFHHPKERIAQTLSVNPLGLPMRPGNAICSYYRIYGVCKFGPTCKFDHPVVAAIPQNYGLPSPTLSVFDPSLLTSPRRLSTVQPTETSPSKQSSTDKLQQSDTKAATEDSSKQADDTTSNSRTPSSESLHE 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03452 425 Gene3D - 46 119 - -
Tsu05g03452 425 Gene3D - 271 353 - -
Tsu05g03452 425 ProSiteProfiles Zinc finger C3H1-type profile. 273 301 IPR000571 GO:0046872
Tsu05g03452 425 MobiDBLite consensus disorder prediction 1 20 - -
Tsu05g03452 425 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 26 2 407 - -
Tsu05g03452 425 ProSiteProfiles Zinc finger C3H1-type profile. 317 345 IPR000571 GO:0046872
Tsu05g03452 425 PANTHER PROTEIN PHOSPHATASE RELATED 2 407 - -
Tsu05g03452 425 SUPERFAMILY CCCH zinc finger 133 163 IPR036855 GO:0046872
Tsu05g03452 425 SUPERFAMILY CCCH zinc finger 278 302 IPR036855 GO:0046872
Tsu05g03452 425 ProSiteProfiles Zinc finger C3H1-type profile. 89 117 IPR000571 GO:0046872
Tsu05g03452 425 MobiDBLite consensus disorder prediction 372 425 - -
Tsu05g03452 425 Gene3D - 120 166 - -
Tsu05g03452 425 SUPERFAMILY CCCH zinc finger 93 118 IPR036855 GO:0046872
Tsu05g03452 425 SUPERFAMILY CCCH zinc finger 52 74 IPR036855 GO:0046872
Tsu05g03452 425 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 138 161 IPR000571 GO:0046872
Tsu05g03452 425 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 275 300 IPR000571 GO:0046872
Tsu05g03452 425 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 92 116 IPR000571 GO:0046872
Tsu05g03452 425 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 73 IPR000571 GO:0046872
Tsu05g03452 425 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 321 343 IPR000571 GO:0046872
Tsu05g03452 425 ProSiteProfiles Zinc finger C3H1-type profile. 47 75 IPR000571 GO:0046872
Tsu05g03452 425 SMART c3hfinal6 136 161 IPR000571 GO:0046872
Tsu05g03452 425 SMART c3hfinal6 47 74 IPR000571 GO:0046872
Tsu05g03452 425 SMART c3hfinal6 273 300 IPR000571 GO:0046872
Tsu05g03452 425 SMART c3hfinal6 317 344 IPR000571 GO:0046872
Tsu05g03452 425 SMART c3hfinal6 89 116 IPR000571 GO:0046872
Tsu05g03452 425 ProSiteProfiles Zinc finger C3H1-type profile. 134 162 IPR000571 GO:0046872
Tsu05g03452 425 SUPERFAMILY CCCH zinc finger 318 343 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03452 Tsu-Chr5 45929910 45934270 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03452 1 405 C3H Transcription Factor Family AT1G04990 44.550 2.18e-113 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tsu05g03452 zf-CCCH 9.5e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03452 - - vra:106765262 693.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g03452 05 45929910 45934270 Tsu05g03452 05 45929910 45934270 ECH