Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03447 ATGGCTCGAATAAGGACAACCCCACGACCGAGGACAGAGTTAGTACTACCGAAACTAACGTTACGAACACCGGTTCGCCCTCTACATGACAAAACTTGCACTCCACCAAAGGAGGATATTTGCACTGCACAAAGTTCGGCAAAGGAAATCCACTATCGTGGTGTTCGAAAGCGACCATGGGGCCGATATGGTGCTGAAATCAGAGACCCGTTAAAAAAGACGCGTCTTTGGTTAGTCACATTCAGAAGTGCCGAAGAAGCTGCTCGTGCTTATGACAAAAAAGCTATTTCCTTCCATGGGGAAAGGGCTATAACAAATTTCCCAATCCTGGATGACATCATTGATGATGCTCAATTTCCTCCTGTTGCTGCTCCTCCGGCTCAGATTCCTCTATCTCCTGCTCCTCTGGTTAACAACTCTGAGACTAGTGAATGTCACTCCTCATGTTATTAG 453 0.4658 MARIRTTPRPRTELVLPKLTLRTPVRPLHDKTCTPPKEDICTAQSSAKEIHYRGVRKRPWGRYGAEIRDPLKKTRLWLVTFRSAEEAARAYDKKAISFHGERAITNFPILDDIIDDAQFPPVAAPPAQIPLSPAPLVNNSETSECHSSCY 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03447 150 PRINTS Ethylene responsive element binding protein signature 74 90 IPR001471 GO:0003700|GO:0006355
Tsu05g03447 150 PRINTS Ethylene responsive element binding protein signature 52 63 IPR001471 GO:0003700|GO:0006355
Tsu05g03447 150 SMART rav1_2 51 114 IPR001471 GO:0003700|GO:0006355
Tsu05g03447 150 SUPERFAMILY DNA-binding domain 51 109 IPR016177 GO:0003677
Tsu05g03447 150 ProSiteProfiles AP2/ERF domain profile. 51 108 IPR001471 GO:0003700|GO:0006355
Tsu05g03447 150 Gene3D AP2/ERF domain 50 110 IPR036955 GO:0003700|GO:0006355
Tsu05g03447 150 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 38 132 - -
Tsu05g03447 150 Pfam AP2 domain 51 99 IPR001471 GO:0003700|GO:0006355
Tsu05g03447 150 CDD AP2 51 110 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03447 Tsu-Chr5 45893153 45893605 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03447 44 116 AP2-EREBP Transcription Factor Family AT3G15210 65.753 1.12e-28 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu05g03447 AP2 1.8e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03447 K09286 - cit:102610536 107.457