Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03445 ATGGCTCGCCAAAGGTTAACCAGAGAACCGAGGCTGCCACTGCCAAGACTCGTGCTTCGAGCACCGATTCCCCCTCCAGCAATCGAAAATCAAACTCCGGCGGAGAACGATGTTCTCACTCCGCCGAATGAAAATCCAACTCCGGAGAACGAAATCCGCTACAGAGGCGTTCGGAAGCGACCGTGGGGACGATACGCCGCAGAAATAAGAGATCCCTCCAAAAAGGCGCGTGTCTGGTTGGGAACGTTCAACACCGCTCTAGAAGCCGCTAGAGCTTACGATGAAAAAGCGATTATGTTCCGCGGAGCCAAAGCCAAGACCAATTTTCCAATTCCAGAACACATCTTGGCTGCTGCTGAGATTCCTGCTcctgttgctgctgctgctccTATTCGTGCTGTTGCTCGTCCTATTAATAATGATAGAATTGAGCTTTTGAATTTTGAGATGCCCGTGAATAGACCGACATCCAGCGGGATGAGTAGTACCGTTGAGTCATTCAGCGGCCCTAGGGCAGTTGTTGTCGGATCGTCATCAACAACAGCTGTTTCTAGGGTTCCTGTTGGTCCTGAGGATTTTCACAGTGATTGTGATTCATCTTCATCTGTTAttgacgatgatgatgaagattgcGTTGTtattgcttcttcatcatcatcagtcAAGAAGCCGCTTGCCATCGATCTCAATTTGCCTGCTTCGATGACTTCTGATGCGGAGGATGAAGAGATCCGTGCTACTGCCTTGCATCTCTGA 756 0.4537 MARQRLTREPRLPLPRLVLRAPIPPPAIENQTPAENDVLTPPNENPTPENEIRYRGVRKRPWGRYAAEIRDPSKKARVWLGTFNTALEAARAYDEKAIMFRGAKAKTNFPIPEHILAAAEIPAPVAAAAPIRAVARPINNDRIELLNFEMPVNRPTSSGMSSTVESFSGPRAVVVGSSSTTAVSRVPVGPEDFHSDCDSSSSVIDDDDEDCVVIASSSSSVKKPLAIDLNLPASMTSDAEDEEIRATALHL 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03445 251 Pfam AP2 domain 53 102 IPR001471 GO:0003700|GO:0006355
Tsu05g03445 251 MobiDBLite consensus disorder prediction 33 47 - -
Tsu05g03445 251 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 49 217 - -
Tsu05g03445 251 PRINTS Ethylene responsive element binding protein signature 54 65 IPR001471 GO:0003700|GO:0006355
Tsu05g03445 251 PRINTS Ethylene responsive element binding protein signature 76 92 IPR001471 GO:0003700|GO:0006355
Tsu05g03445 251 SMART rav1_2 53 116 IPR001471 GO:0003700|GO:0006355
Tsu05g03445 251 MobiDBLite consensus disorder prediction 20 50 - -
Tsu05g03445 251 SUPERFAMILY DNA-binding domain 53 111 IPR016177 GO:0003677
Tsu05g03445 251 CDD AP2 53 111 IPR001471 GO:0003700|GO:0006355
Tsu05g03445 251 ProSiteProfiles AP2/ERF domain profile. 53 110 IPR001471 GO:0003700|GO:0006355
Tsu05g03445 251 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 49 217 - -
Tsu05g03445 251 Gene3D AP2/ERF domain 52 111 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03445 Tsu-Chr5 45883698 45884949 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03445 51 187 AP2-EREBP Transcription Factor Family AT1G50640 52.899 1.40e-33 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu05g03445 AP2 2.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03445 K09286 - twl:120001102 157.147