Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03443 ATGGAAAATTCAGACAACGACGAACCAGAGAAGAAGAGACTTCATCTTCTCACACCAGTTTCTTCCCGCGTTTCACGAAATTCAACAAATCATTCTCCTAACAGTAAAACTGCTGATGCAGGTGTCTTACAGCTCCAGAATCAGCAGCTTGTTCAGGAGACAGAAATTCAGAAACAGGCTTTACACGAAGTTGAAGATAAAACTAGAGAATTAAAAGAAAGACAAAAGGCTTATGATGACATATTAATCACATTCAACCAACACTGGGATCAGTTGGTTGATGATATGGCTCTTCTCGGGATACAAGCTGGGAGAGGGAAAGATTCTTTGCAAACTTTGGATTACCCTGATAATCCTCAAGGGTCACTTCCTTCTTGTCCTCCGGATGATCTATTTCTGTGTAGATTAATCCAGAAAGATTGTATTGAAGGAAGCAGTAATAAtgagataattaattatgttgAGGAAGCCCTTGCTTTGCGTCGGTTATCTACTACAGAGTTGTTGAAACTCATCCAAGATACCGTTGATGATCAGATGGAAAGAATTGAGGATATAGGTCAGGTTTTACACGGAGATTTATCTACGGAAGATGCTGTCAACCGAATCTCTAAGATTGATGATATGACGAAAAAGGAGGTAGACAATTTTCATGAAGTGATTGACACTCTCCATGCAAAACACAAAGAGTATACTGTTGGTATTCAGAATTATATAGACGAGTGCTTACGAGATCAATCTGTCATAAAACGCCTTACAGGAGAGCTTGACGAGATCGTGGCTGAACTTGAAGAGAGTAGAAGAAAACTAGTCAGTCTGAAAATGCAAAAGGATGCAGCTATGGGAATGAATTCCTCCAATGCAGATGCAGTGAATGGAAACTTGTCTCCTGAGAAGCCTGCAGACAGGGCTATGGGTTTGTCTGAGTTGAAGAATTCAATTGAGGAAGCCAAGATAGTGGATGCTGATCGTCTTTCTGAGCTTCAAGATTCACGGGAAAGAAATCAAATCTTGACAAAGCAATTCCAAGAACTCCAGAATGAATTGAATGATGATAAGTATGTACGCTCTTCCCGAATATACTCTTTGGCAAATGAtcaacttcaacattggatTGCTGAATTGGATCGATACACGTCATTGGCGGAGTCTCTGCAGGCTGGAAGGGCTAATGTCACAAAACGGGACAAGGAACTGAAGCTGAAATTGGAGTCTGCTGATAACGCAAGGCATATTCTTGGCAGTTCTGACGCTGGGAATGATGAGCTCGAGCTTCAGTTGCAGAAATGTATTATTGAACGAAATGATCTGGAACTTACATTGGAAGAGGCCAAACAGGATACTGGGAGAAAAGATATCAAAGTTGAGTTTCGTGTGATGGCCTCGGCCTTATCTAAAGAAATGGGGATGATGGAAGCGCAGTTGAAGCGATGGAAGGATGCAGCTCTTGAAGCTGTATCATTGCGTGAGAAAGCACATTCACTTAAAGCAACATTGAGTGGGAAGACAAGCGATCTCAAGAGCCTTGCAAACAAATGTGCGGAGCAGGTTTTGGAAATAAAGTCTTCAAAAGCATTGATTGGAAAGTTACAGCAGGAGAATCAGGAGTTAGAATTTGTTTTGGATATGTATGGCTTGGAGGATTATCAGAAAAGCTTGCCAGAAGTTAGAGAATCTGAAAATAAAGCTCGCTCTCAAGCTGAAATGCTGAAAAATGCTTTTGATGAACATGGTCTAGAGTTGAGAGTAAGAGCTGCTAATGAAGCTGAAGCTGCTTGTGAACAAAGGCTTTCTGCTGCAGAAGCTGAAATGGAAGAGTTAAGGGCACAGCTTGATAAAACGGAAAGAAACAAATTGGAGATGACTGAGGCTATTAAAGTTAAAGAGGCTGAGGCAGAGATCTATATCTCTGAAATCGAGACTATTGGTCAAGCATATGAAGATATGCAGACACAGCACCAACATCTGTTGCAGCAGGTGGCTGAGAGGGATGACTTTAATATTAAGCTTGTATCAGAAAGCGTGAAGGCAAAACAATTACATAGCTCATTACTGTCTGAGAAGCAAGCCTTAGCAGATCAACTTAAACAGATTAATTCTTTGATAGAAAATTCAAAGGCGAAGATTGCAAGTAGTGAACAACAGATTGAACGTATTCTATCAGAAGCTGCAAAATGTACTCAAGATGAAAAACACCTTGCAGCTGCCTTAGAGTTTACCAGGTGGGAATTGGCTGATGCTGAGAAGGAGTTGAGGTTGCTCAAGTCTGTTGCTTCATCCTCAGAGAAAGAATATGACCAAATTCAGAAAGATATTGAAGCTATTGAAAAGGAATTGGATAGTGAAAGGAATTCACGGAAGAAGCTTGAGGAAGAACTAATGGAAGTGAACAGCCAAATTGCTGAGTTGAAGGCTGAAACTGGAGAAACTGCAGTACAACAACTTGAAGAAGAAATAAGAGTCTGCAAGAACATGATCAAGTGTACTGTCTGTTCTGACCGCCCAAAGGAGGTTGTGATTGTGAAGTGCTATCATCTATTCTGCAATCCATGCATACAAAGAAATCTTGAACTCCGTCACCGCAAATGCCCTGCTTGTGGAACAGCATTTGGACAGAGCGATGTTCGTTTTGTTAAAATATGA 2643 0.4041 MENSDNDEPEKKRLHLLTPVSSRVSRNSTNHSPNSKTADAGVLQLQNQQLVQETEIQKQALHEVEDKTRELKERQKAYDDILITFNQHWDQLVDDMALLGIQAGRGKDSLQTLDYPDNPQGSLPSCPPDDLFLCRLIQKDCIEGSSNNEIINYVEEALALRRLSTTELLKLIQDTVDDQMERIEDIGQVLHGDLSTEDAVNRISKIDDMTKKEVDNFHEVIDTLHAKHKEYTVGIQNYIDECLRDQSVIKRLTGELDEIVAELEESRRKLVSLKMQKDAAMGMNSSNADAVNGNLSPEKPADRAMGLSELKNSIEEAKIVDADRLSELQDSRERNQILTKQFQELQNELNDDKYVRSSRIYSLANDQLQHWIAELDRYTSLAESLQAGRANVTKRDKELKLKLESADNARHILGSSDAGNDELELQLQKCIIERNDLELTLEEAKQDTGRKDIKVEFRVMASALSKEMGMMEAQLKRWKDAALEAVSLREKAHSLKATLSGKTSDLKSLANKCAEQVLEIKSSKALIGKLQQENQELEFVLDMYGLEDYQKSLPEVRESENKARSQAEMLKNAFDEHGLELRVRAANEAEAACEQRLSAAEAEMEELRAQLDKTERNKLEMTEAIKVKEAEAEIYISEIETIGQAYEDMQTQHQHLLQQVAERDDFNIKLVSESVKAKQLHSSLLSEKQALADQLKQINSLIENSKAKIASSEQQIERILSEAAKCTQDEKHLAAALEFTRWELADAEKELRLLKSVASSSEKEYDQIQKDIEAIEKELDSERNSRKKLEEELMEVNSQIAELKAETGETAVQQLEEEIRVCKNMIKCTVCSDRPKEVVIVKCYHLFCNPCIQRNLELRHRKCPACGTAFGQSDVRFVKI 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03443 880 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 809 879 IPR013083 -
Tsu05g03443 880 SUPERFAMILY Tropomyosin 687 829 - -
Tsu05g03443 880 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BRE1 22 880 - -
Tsu05g03443 880 Coils Coil 249 276 - -
Tsu05g03443 880 PANTHER RING FINGER PROTEIN-RELATED 22 880 IPR013956 GO:0004842|GO:0010390
Tsu05g03443 880 ProSitePatterns Zinc finger RING-type signature. 843 852 IPR017907 -
Tsu05g03443 880 MobiDBLite consensus disorder prediction 20 39 - -
Tsu05g03443 880 CDD RING-HC_BRE1_like 826 867 - -
Tsu05g03443 880 SUPERFAMILY RING/U-box 827 871 - -
Tsu05g03443 880 Pfam Zinc finger, C3HC4 type (RING finger) 827 869 - -
Tsu05g03443 880 Coils Coil 47 67 - -
Tsu05g03443 880 Coils Coil 420 447 - -
Tsu05g03443 880 Coils Coil 583 631 - -
Tsu05g03443 880 MobiDBLite consensus disorder prediction 1 17 - -
Tsu05g03443 880 SMART ring_2 828 866 IPR001841 -
Tsu05g03443 880 Coils Coil 688 729 - -
Tsu05g03443 880 Coils Coil 328 348 - -
Tsu05g03443 880 MobiDBLite consensus disorder prediction 1 39 - -
Tsu05g03443 880 ProSiteProfiles Zinc finger RING-type profile. 828 866 IPR001841 -
Tsu05g03443 880 Coils Coil 737 818 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03443 Tsu-Chr5 45840885 45854536 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03443 801 875 RAD5 or RAD16-like Gene Family AT5G05130 26.190 2.06e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03443 K10696 - gmx:100796610 1271.91