Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03435 ATGGATTACCTTCACTACACTCGAAATTACCCTTTCATACATGCAGAATTCATCACCAAAAACTCTCCACATTTCATCAATTACCTTATCTCCAAGAGCAACATTCAAGACAGCGACGTTTTTCGTTCTCTGAGGAGGTATCTTATGTATAACCCTATTAACGAATTTGAACCCTTTTTAGAGAGTTTAGGTATTAAACAAAGGGAATTGCAATCATTTCTTcctaaagctttgatttttcTTAGTGATGATAGTCTTTTAGTTGATAATTTTAATGTATTGTATAATCACGGGGTTCCGAGGAATAGAATAggtaaaatttataaagaagCAAGAGAGGTTTTTGGGTATCGTAGTGGAGTTTTGGCGAAGAAATTCAAAGATTATGAAGATTTGGGTTTGAGTAAATCTTGTTTTATCAAGCTTGTTGTTTGTTGTCCATTGCTTTTGGTTGGTGATGTTGATTCTGATTTTGTTGCTGTTCTTGATTGGTTGAAGAAAATTGGGATTGAGAGTCAATGGATTGCGCGTTGTATGTCTTGTTCAAGAACGTATAGTTGGAAAAGAATGATCAATACTATAGAGTTTGTTCATCAAGTTGGATATTCTGAGAAACAAAtgtatgatttgtttaaggGAGACCCTAAATTGTTGTTGGAAGGTTTAGGGAAGAAGTTGTACTTGCTTTTAGGTCGGTTGATTAAGTTTGGTGTTGATGTGAATGTGGTTACTTCTTGTTTTGTTGAGCATCCCGATATGTTGTCAAGTGAACGTGTGGAAAATTTGATGACTGTGATTGCTTTTTTGTATAATATTCGAATGGAACAAGATGATATTGAGCATGTTTTGACTAACTACATGCATATCCTGAGCAAACATTCGATAAAAGGTCAGAGAACTGTTTGTATGGAGTTAAGAATTGGAAAAGCTGATCTATGTCGAATCATAAAGGATGATCCATTAGAGCTTATTTGTTTGGCTTCGAAAACGGAAAAGAAGAGGGTGGGAAGGGAACAGTGTTGTGACCCACGTAATTATTTGGATAAAACAACTTTCTTGCTGAAATTGAGCTATATTGAGAATTCCGAGGAGATGGAAGAAGCAACGAAGATGTTTAAAGGGAGAGGTGATCTGTTACAAGAGAGATTTGATTGCCTGGTAGAAGCTGGTTTGGATTATAACAGCGTGGTTAGTATGATAAAGCGAGATCCTAGGATTCTAAACCTGAAGAGAACTGTACTTGAAAAGAAGATTGATTTCATGAAAAACACTTCAGTTTTCCCATTAGAATGTGTTGTGAGATACCCAGCTTACTTCTCTCATGATTTGGGCTTGCTTAGTGCCAGATTTTCGATGTACCAGTGGTTGAAGAAGAGGAATGCAATAAACCGTGCTATATCCTTATGTACCATAGTTTCATATACTGAAAAGAAGTTTGTAAAATTCTTTGTGAATATGGATCCTGAAGGTCCAACAATCTGGGAGAGTATAAAAAGTTTATCAAACAAAGATAGGAATTAA 1521 0.3465 MDYLHYTRNYPFIHAEFITKNSPHFINYLISKSNIQDSDVFRSLRRYLMYNPINEFEPFLESLGIKQRELQSFLPKALIFLSDDSLLVDNFNVLYNHGVPRNRIGKIYKEAREVFGYRSGVLAKKFKDYEDLGLSKSCFIKLVVCCPLLLVGDVDSDFVAVLDWLKKIGIESQWIARCMSCSRTYSWKRMINTIEFVHQVGYSEKQMYDLFKGDPKLLLEGLGKKLYLLLGRLIKFGVDVNVVTSCFVEHPDMLSSERVENLMTVIAFLYNIRMEQDDIEHVLTNYMHILSKHSIKGQRTVCMELRIGKADLCRIIKDDPLELICLASKTEKKRVGREQCCDPRNYLDKTTFLLKLSYIENSEEMEEATKMFKGRGDLLQERFDCLVEAGLDYNSVVSMIKRDPRILNLKRTVLEKKIDFMKNTSVFPLECVVRYPAYFSHDLGLLSARFSMYQWLKKRNAINRAISLCTIVSYTEKKFVKFFVNMDPEGPTIWESIKSLSNKDRN 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03435 506 Pfam mTERF 195 337 IPR003690 GO:0003690|GO:0006355
Tsu05g03435 506 Pfam mTERF 379 479 IPR003690 GO:0003690|GO:0006355
Tsu05g03435 506 Pfam mTERF 54 155 IPR003690 GO:0003690|GO:0006355
Tsu05g03435 506 SMART mt_12 244 275 IPR003690 GO:0003690|GO:0006355
Tsu05g03435 506 SMART mt_12 362 392 IPR003690 GO:0003690|GO:0006355
Tsu05g03435 506 SMART mt_12 140 171 IPR003690 GO:0003690|GO:0006355
Tsu05g03435 506 SMART mt_12 397 428 IPR003690 GO:0003690|GO:0006355
Tsu05g03435 506 SMART mt_12 429 460 IPR003690 GO:0003690|GO:0006355
Tsu05g03435 506 SMART mt_12 105 135 IPR003690 GO:0003690|GO:0006355
Tsu05g03435 506 PANTHER MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 1 498 - -
Tsu05g03435 506 Gene3D Transcription termination factor 3, mitochondrial 225 490 IPR038538 -
Tsu05g03435 506 Gene3D Transcription termination factor 3, mitochondrial 39 157 IPR038538 -
Tsu05g03435 506 PANTHER CGI-12 PROTEIN-RELATED 1 498 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03435 Tsu-Chr5 45732907 45734780 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Tsu05g03435 mTERF 1.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03435 - - gmx:100803162 612.068