Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03434 ATGCCATTTTTTTCTAGGAATTCACGGAAGAAGCTTGAGGAAGAACTAATGGTATTGAATAGCCAAATTGATGAGCTGAAGGCTGAAACCGCAGTACAACaagttgaagaagaaataaGAGTTTGCAAGAACATGATCAAGTGTACTGTGTGTTCTAATCGTCCAAAGGAGGCTGTGATTGTGAAGTGCTATCATCTGTTCTGCAATCCATGCATACAAAGAAATCTTGAACTCCGTCACCACAAATGTCCTGCCTGTGGAACAGCATTTGGACggtga 279 0.3871 MPFFSRNSRKKLEEELMVLNSQIDELKAETAVQQVEEEIRVCKNMIKCTVCSNRPKEAVIVKCYHLFCNPCIQRNLELRHHKCPACGTAFGR 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03434 92 Coils Coil 9 29 - -
Tsu05g03434 92 SUPERFAMILY RING/U-box 43 90 - -
Tsu05g03434 92 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 92 IPR013083 -
Tsu05g03434 92 ProSiteProfiles Zinc finger RING-type profile. 48 86 IPR001841 -
Tsu05g03434 92 Pfam Zinc finger, C3HC4 type (RING finger) 47 88 - -
Tsu05g03434 92 PANTHER RING FINGER PROTEIN-RELATED 6 91 IPR013956 GO:0004842|GO:0010390
Tsu05g03434 92 ProSitePatterns Zinc finger RING-type signature. 63 72 IPR017907 -
Tsu05g03434 92 SMART ring_2 48 86 IPR001841 -
Tsu05g03434 92 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BRE1 6 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03434 Tsu-Chr5 45730011 45732238 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03434 10 86 RAD5 or RAD16-like Gene Family AT5G05130 20.930 1.33e-06 42.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03434 K10696 - gmx:100811776 149.058