LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu05g03426	atgaggaaaagagagagGGAAAATCCTTGTGGTGTATGTGGGCACTATCACAAAtatgaagaaggtgaagtttGTTCAATTTGTGGTCATAGGGTTCCAGTTGGATCGGAGAAAAGTTCTATACAAGTTAGTGCTTTTCCTTCTGTGATCTTGCCTGAGTTTCTCTACTTGGGAAGTTATGATAACGCTTCACGTTCTGAGCTTCTCAAAACTCAAGGGATTTCACGTATTCTCAATACTGTCCCGTCTTGTCAAAATCTCTACAAGAACTCATTTACCTATCATTGCCTCCCAGATGACAAAACTTTCCAATTTGATGAAGCAAACCAGTTTCTTGAGCAATGTGAGAAGGATAAGGAGCGTGTTCTGGTTCATTGCATGTCAGGGAAGAGTAGGTCCCCAGCCGTTGTGATTGGCTACCTGATGAAGTCCAGAGGATGGAGACTTGCTCAGAGTTATCAGTGGGTAAAAGAACGCAGAACTTCCGTTGAATTATCTGAAGGTGCCTACCAGCAACTACAGGAGTACGAGCAAAAGCTATTTGGATCAGTTGGCAACTCGATGCTATCTGCTGGTTTCCCACCTGTAGCAGGACCATCTTCAATAAGCTTTGGCTTCCCAAAAACCAATGAAATACCTCAACTTCCTGCCTTCGGCTGCACTACAACTCCTTCAATTTTCGCTCGAGCACCGTCCAACATAGCTCCTTCGGACTTCACATTCGGAGCTGGTCAGAATGCTACTGGAAATCCTTTCAATACAAATCCATCTAATCCTAATGCCACCGATATTCAAATGGATTGA	804	0.4192	MRKRERENPCGVCGHYHKYEEGEVCSICGHRVPVGSEKSSIQVSAFPSVILPEFLYLGSYDNASRSELLKTQGISRILNTVPSCQNLYKNSFTYHCLPDDKTFQFDEANQFLEQCEKDKERVLVHCMSGKSRSPAVVIGYLMKSRGWRLAQSYQWVKERRTSVELSEGAYQQLQEYEQKLFGSVGNSMLSAGFPPVAGPSSISFGFPKTNEIPQLPAFGCTTTPSIFARAPSNIAPSDFTFGAGQNATGNPFNTNPSNPNATDIQMD	267

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu05g03426	267	ProSiteProfiles	Dual specificity protein phosphatase domain profile.	46	182	IPR020422	GO:0006470\|GO:0008138
	Tsu05g03426	267	SUPERFAMILY	(Phosphotyrosine protein) phosphatases II	47	181	IPR029021	-
	Tsu05g03426	267	PANTHER	PROTEIN-TYROSINE-PHOSPHATASE IBR5	1	267	-	-
	Tsu05g03426	267	ProSitePatterns	Tyrosine specific protein phosphatases active site.	124	134	IPR016130	GO:0016311\|GO:0016791
	Tsu05g03426	267	MobiDBLite	consensus disorder prediction	243	267	-	-
	Tsu05g03426	267	Gene3D	Protein tyrosine phosphatase superfamily	40	186	IPR029021	-
	Tsu05g03426	267	CDD	DSP_plant_IBR5-like	47	176	-	-
	Tsu05g03426	267	Pfam	Dual specificity phosphatase, catalytic domain	55	179	IPR000340	GO:0008138\|GO:0016311
	Tsu05g03426	267	PANTHER	PROTEIN-TYROSINE-PHOSPHATASE IBR5	1	267	IPR044212	GO:0009734\|GO:0009738\|GO:0033549\|GO:0043407
	Tsu05g03426	267	ProSiteProfiles	Tyrosine specific protein phosphatases domain profile.	105	171	IPR000387	GO:0016311\|GO:0016791
	Tsu05g03426	267	SMART	dsp_5	46	179	IPR020422	GO:0006470\|GO:0008138

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu05g03426	1	166	Protein tyrosine phosphatase (PTP) family	AT2G04550	75.148	3.80e-96	278

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu05g03426	K04459		-	gmx:100808721	449.514

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tsu05g03426	05	45674284	45677991	Tsu05g03426	05	45674284	45677991	ECH