Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03415 ATGTCCAGAGAAAGGGAGAGATTATTTGACGAGATAGGAAAGAAGAGGGAAGGAGATGATTCTTTTGCAAAGGGAAGAATGTTAGGACCTTCTGGAACGCTAAATACAACTACTCCTTGTGCTGCATGTAAGCTTTTGAGACGAAGGTGTGCTCAAGAATGCCCTTTTTCTCCATATTTCTCTCCTCATGAGCCTCAGAAGTTTGCTTCTGTCCACAAAGTCTTTGGTGCTAGCAATGTCTCAAAGTTGCTATTGGAGGTACCAGAGAATCAAAGAGCAGATGCAGCAAATAGTTTAGTTTATGAAGCTAATGTAAGACTAAGAGATCCAGTATATGGATGCATGGGTGCAATATCATCTTTGCAACAACAAATTCAATCATTATTAGGTGAACTTAATGCTGTAAGGGAAGAAATACATAAATACAAACTCATAGAAGCTAACATGCTACCTTCTTCAGAGGATGTATCAATTGCTAGTAGTACTCTACCATCTACAACAACACTACCAATGCTTCCTTCTTCCATTTACACACAACAAACAAATCCTACCAATTATAGCTCAATTTCAAGTGATCATATTTCCTACTTTGattaa 597 0.3786 MSRERERLFDEIGKKREGDDSFAKGRMLGPSGTLNTTTPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKLLLEVPENQRADAANSLVYEANVRLRDPVYGCMGAISSLQQQIQSLLGELNAVREEIHKYKLIEANMLPSSEDVSIASSTLPSTTTLPMLPSSIYTQQTNPTNYSSISSDHISYFD 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03415 198 Pfam Lateral organ boundaries (LOB) domain 39 135 IPR004883 -
Tsu05g03415 198 ProSiteProfiles LOB domain profile. 38 139 IPR004883 -
Tsu05g03415 198 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 24 198 - -
Tsu05g03415 198 PANTHER LOB DOMAIN-CONTAINING PROTEIN 15 24 198 - -
Tsu05g03415 198 Coils Coil 118 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03415 Tsu-Chr5 45481792 45483675 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03415 27 157 AS2 family AT2G40470 79.851 6.23e-68 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tsu05g03415 LOB 1.6e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03415 - - gmx:100790799 273.092
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g03415 05 45481792 45483675 Tsu05g03415 05 45481792 45483675 ECH