Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03414 ATGAACATAAATTTccatggtttcttcttcctttttctccTTTCAATCTTTTTCATTTCCACCTTAGCTTTTGGTGCCACTCTCTCCAAAGATGAAGTGGAAGTTCTTCAAGATATAGCTAAAACACTTGGGAAGAAAGATTGGGATTTCAGTGTAGATCCATGTAGTGGAGAAAGGAATTGGGCATCTATTGTTCAAGTGAAAGGGAGTGAAAATGCTGTCACATGCAATTGTACCTTTGTCAATGCTACTGTTTGTCATGTGACTCACATACTTTTGAAACAACAAAATCTCCCGGGCACTCTCCCACCAGAATTGGTCAGGCTACCTTATCTTCAAGAATTTGACGTTACCCGCAATTACTTGAATGGTACAATTCCTAAAGAATGGGGCTCCATGAATAATCTTGTAAACATCTCCCTCCTTGGAAATCGATTAACCGGTTCAATAATAGCTTTAACAAACATATCAACTCTCCAAAGTTTGGGATTGGAGTCCAATCAATTCTCTGGAAATCTTCCTCCTGAGCTTGGGAATCTAAACCAACTTCAAAGACTGTTAATTTCTTCCAACAATTTCACTGGAGAACTACCTGATACATTGGTCAAACTCACCACATTACAAGATGTTCGAATTGGAGACAATCAATTCTCTGGGAAGATACCTGATTTTATTCAAAACTGGACAAGTCtccaaaaattAGTTATTCAAGGGAGTGGATTAAGTGGGCCAATTCCATCTggaatttcacttttaaaaaaattgactgaCTTGAGAATCAGTGATTTAAGTGGATCTGAGCATTCAACTTTTCCTCAACTCAGTGATATGAAATTGAAAACTTTGATTCTAAGGAATTGCAACATCAATGGAACACTGCCTAAGTATCTTGAGGCAATGACTAGTCTAAAAAACTTAGATCTTAGCTTCAACAAATTGAGTGGAGCACTTCCAAGTGACTATGATCCTCTAAAAAAAGTGGATAACTTcTATTTAACTGGAAACCTTCTCACTGGACCAGTTCCTTCATGGGCACAAAAAGCTGATAGCTTAGACATTTCATACAATAACTTCACTTTAAGCCAAGGGAGTCAATGTCAAGATGCAAATGTGAACTTGTTTTCTACCTCTTCGATCCGCAATGACTCAGGAGTGCCTTCATGTTTGTCAAACTTTGTCTGCCCTAAAACTTCATCATATGGTCTTCATATAAACTGTGGTGGAGGGTTGGTTACAGTCAATGGAAGTACATACGACGATGATACAGAATCAGCAGGACCAGCTAGATTCCACCAGAATGGGGGGAAAAATTGGGCATTTAGTACCACCGGTAACTTCATGGATATCGACGGCAATGACTTGTATACCGTGTCGGATAAATCTACACTTTCTGCGACCAATCCTGAACTATTCAAAGATGCACGAGTTTCTCCTACATCTTTGACTTATTATGGATTTTGCATGGGGAACGGAAACTACACAGTAAATCTACATTTTGCAGAAATCATTTTCATCGATGATCAAACATATAACAGCTTAGGAAGGCGTATATTCGATATCTATATTCAGGGAGAGTTAGTACAAAAGGACTTCAATATTGCAAAAGAAGCAGGAGGAATTGGTATGGCAATCACAAAACCATTCACTGCTGTTGTGAGTAAAAATACCTTGGAGATTCGCTTATATTGGGCCGGAAAAGGGACAACCAGTATACCATCTAAAGGAGTATATGGCCCTCTTATATCAGCTATAACTGTTAAACCAGAGTTTACCCCTCCTTCTGATGGTGGAAGTAGCAGCATATCTGCAGGAGCTGTGGTTGGAATTGTGGCTGCAGTCGCAATTGTTATCatcctattattttttattcttcggTGGAAAGGCTGTTTTGGAAAGAAAAGCTCTTTAGAAAGAGAAGTAAAGGGTTTAGACCTACAAATGAGTTTATTTAATGTAAGACAAATCAAATCAGCAACAAATAACTTTGATATTGCCAATAAGATTGGAGAAGGAGGATTCGGTCCAGTATACAAGGGGCGTCTATCAGATGGTACATTGGTAGCAGTCAAGCAACTTTCTTCTAAATCGAAGCAAGGGAATCGCGAGTTTTTAAATGAAATCGGCATGATTTCGGCTTTGAACCACCCTCATCTTGTTAAACTCTATGGATGCTGTGTCGAAGGAGATCAGTTAATGCTAATATATGAATATTTGGAAAATAATAGTCTTGCTCGTGCTTTATTTGGACCTCCAGAACACcaaataaaattggattggcCAACAAGATACAGAATTTGTGTTGGTATTGCTAGAGGTTTAGCATATCTCCATGAAGAATCAAGGCTGAAGGTTGTTCATAGGGACATTAAAGCCACTAATGTGTTGCTTGATAAAGATCTCAATCCGAAGATATCTGATTTTGGTTTGGCCAAACTCGATGAAGAAGAGAACACTCACATTAGCACTCGAATAGCCGGGACATATGGATATATGGCTCCGGAATATGCTATGCATGGTTATTTGACCGACAAAGCAGATGTCTATAGTTTTGGAATCGTTGCCTTGGAAATCTTACACGGTAGTAACAACACCATTCTTCGACAAAAAGGATCAGAAGCATTCCATCTTCTTGATTGGGCACATGTcttgaaagaagaaaataatcTATTGGAGCTAGTTGATAAAAGATTAGGTTCAAATTTCAACAAAGAagaagcaatgataatgataaatGTAGGACTCTTATGCACTAATGTGACTTCAGCACTTAGGCCAGCAATGTCTTCAGTGGTAAGCATGTTAGAAGGTAAAATTGCTATTAAAGAATTGATTTTAGAGTCAAGTGAAGTATTGGATGAGAAGAAAATGGAAGCAATGAGACAATACTATCAAGATCATAGTATATCAATGGAAGAAGGACCATGGACTGGTACATCTTCTTCAGTTGCTACTGATCTTTATCCTGTAGATTCTTCTTACTTGGAGAAAAGAGTTTAG 2997 0.3674 MNINFHGFFFLFLLSIFFISTLAFGATLSKDEVEVLQDIAKTLGKKDWDFSVDPCSGERNWASIVQVKGSENAVTCNCTFVNATVCHVTHILLKQQNLPGTLPPELVRLPYLQEFDVTRNYLNGTIPKEWGSMNNLVNISLLGNRLTGSIIALTNISTLQSLGLESNQFSGNLPPELGNLNQLQRLLISSNNFTGELPDTLVKLTTLQDVRIGDNQFSGKIPDFIQNWTSLQKLVIQGSGLSGPIPSGISLLKKLTDLRISDLSGSEHSTFPQLSDMKLKTLILRNCNINGTLPKYLEAMTSLKNLDLSFNKLSGALPSDYDPLKKVDNFYLTGNLLTGPVPSWAQKADSLDISYNNFTLSQGSQCQDANVNLFSTSSIRNDSGVPSCLSNFVCPKTSSYGLHINCGGGLVTVNGSTYDDDTESAGPARFHQNGGKNWAFSTTGNFMDIDGNDLYTVSDKSTLSATNPELFKDARVSPTSLTYYGFCMGNGNYTVNLHFAEIIFIDDQTYNSLGRRIFDIYIQGELVQKDFNIAKEAGGIGMAITKPFTAVVSKNTLEIRLYWAGKGTTSIPSKGVYGPLISAITVKPEFTPPSDGGSSSISAGAVVGIVAAVAIVIILLFFILRWKGCFGKKSSLEREVKGLDLQMSLFNVRQIKSATNNFDIANKIGEGGFGPVYKGRLSDGTLVAVKQLSSKSKQGNREFLNEIGMISALNHPHLVKLYGCCVEGDQLMLIYEYLENNSLARALFGPPEHQIKLDWPTRYRICVGIARGLAYLHEESRLKVVHRDIKATNVLLDKDLNPKISDFGLAKLDEEENTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVALEILHGSNNTILRQKGSEAFHLLDWAHVLKEENNLLELVDKRLGSNFNKEEAMIMINVGLLCTNVTSALRPAMSSVVSMLEGKIAIKELILESSEVLDEKKMEAMRQYYQDHSISMEEGPWTGTSSSVATDLYPVDSSYLEKRV 998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03414 998 Pfam Protein tyrosine and serine/threonine kinase 664 889 IPR001245 GO:0004672|GO:0006468
Tsu05g03414 998 Gene3D Ribonuclease Inhibitor 32 154 IPR032675 -
Tsu05g03414 998 Gene3D Ribonuclease Inhibitor 155 225 IPR032675 -
Tsu05g03414 998 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 290 358 - -
Tsu05g03414 998 ProSiteProfiles Protein kinase domain profile. 662 951 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g03414 998 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 381 956 - -
Tsu05g03414 998 SUPERFAMILY Protein kinase-like (PK-like) 646 948 IPR011009 -
Tsu05g03414 998 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 75 289 - -
Tsu05g03414 998 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 290 358 - -
Tsu05g03414 998 Gene3D Transferase(Phosphotransferase) domain 1 738 948 - -
Tsu05g03414 998 Gene3D Ribonuclease Inhibitor 226 394 IPR032675 -
Tsu05g03414 998 Pfam Malectin domain 402 584 IPR021720 -
Tsu05g03414 998 ProSitePatterns Serine/Threonine protein kinases active-site signature. 784 796 IPR008271 GO:0004672|GO:0006468
Tsu05g03414 998 Gene3D - 398 589 - -
Tsu05g03414 998 SUPERFAMILY L domain-like 82 359 - -
Tsu05g03414 998 SMART serkin_6 662 908 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g03414 998 Gene3D Phosphorylase Kinase; domain 1 630 737 - -
Tsu05g03414 998 CDD STKc_IRAK 668 936 - -
Tsu05g03414 998 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 75 289 - -
Tsu05g03414 998 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 381 956 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03414 Tsu-Chr5 45467878 45476932 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03414 19 964 Receptor kinase-like Gene Family AT1G53420 55.370 0.0 1001
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu05g03414 PK_Tyr_Ser-Thr 1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03414 - - gmx:732563 1437.94