Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03410 ATGACCTCACAACTCATCAAAATTTGTAGCAAAAGAAAAAGCAATTACTTGCACCAAAGAGATAGAaagagaaaacacaaaaaagaaattatggtTTCTAGGGAGCAAAAGAGAGCAGCACTGCATGAGAAGCTGCAACTTCTTCGTTCTGTTACTAACTCTCATGCTCTAGACGACACCTCGATCGTAATCGATGCATCGAGGTATATCGAAAATCTAAAGGAAAAGGTTGAAAGATTGAATGAAGAAATAGCATCTGCAGAAAGTTCAAGTGTTCATAACCCATTGCCTATGGTTACGGTGGAAACCCTAGAAAAAGGATTTCTTATAAACGTTTTTTCAGCAAAAAGCAGCCAAGGTATGCTTGTTTCAATACTTGAAGCCATTGAAGAGATGAGACTTACGGTGCTTGAAGCTAGGGCTTCTTGTACAGACACTTTTCGATTCCAAGCTGTTGGAGGAGAGAATGAAGAACAAGGTGAGACTATTGATGCACAAGCTGTGAAACAAGCAGTGGGACAAGCAATAAAAAATTGGAGTGAAAGTACCGATCAAGTGTAA 561 0.3779 MTSQLIKICSKRKSNYLHQRDRKRKHKKEIMVSREQKRAALHEKLQLLRSVTNSHALDDTSIVIDASRYIENLKEKVERLNEEIASAESSSVHNPLPMVTVETLEKGFLINVFSAKSSQGMLVSILEAIEEMRLTVLEARASCTDTFRFQAVGGENEEQGETIDAQAVKQAVGQAIKNWSESTDQV 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03410 186 Coils Coil 63 90 - -
Tsu05g03410 186 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 32 185 - -
Tsu05g03410 186 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 32 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03410 Tsu-Chr5 45405925 45408912 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03410 17 172 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 26.437 4.00e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03410 - - gmx:100306253 248.054
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g01513 04 15800420 15803835 Tsu05g03410 05 45405925 45408912 ECH
Tsu03g00796 03 7256346 7257790 Tsu05g03410 05 45405925 45408912 ECH
Tsu05g03410 05 45405925 45408912 Tsu05g03410 05 45405925 45408912 ECH