Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03409 ATGTCGCCGGTGACCGGAGCAAACTTACCTCTCTTATCAGGATCAAAGGTATCATCCGAACCAGCGGCAACAATTTCCGGTGCAGTGTTTAATGTCGCGACAAGTATAATTGGCGCCGGAATTATGTCACTTCCGGCGACTTTGAAGGTTCTCGGAGTGATTCCGgcgtttgttttgattttggtgatTGCTATATTGGCGGAAATATCGGTGGAGTTTTTGATGAGGTTTACACATTCAGGTGAAACGACGACGTATGCTGGTGTTATGAGAGAAGCTTTTGGACCTTTAGGAGCTATTGCTACTCAACTTTGTGTTGTGATTACTAATCTTGGGTGTTTAATTATGTACTTAATTATTATTGCTGATGTACTTTCTGGAAATAAACCTGATGGAGAAGTACATTTAGGTCTTTTGCAACAATGGTTTGGAATTCATTGGTGGAATTCAAGAGAATTTGCTTTGCTCATCACTTTAATCTTCATTTTGCTTCCATTGGTATTGTACCGTCGTGTAGAGTCGTTGAAGTTTAGTTCTGCAGTATCAACACTACTTGCTGTGGCATTTGTTACAATATGTTCTGTGTTGGCAATTGTTGCTCTTGTGGAAGGAAAAACAGAAACACCTAGATTGGTTCCTCGTTTGGACCATGAAACTACTTTCTTTGATCTTTTCACTGCAGTTCCGGTTATTGTTACCGCCTACACATTTCATTTTAATGTACATCCAATTGGATTTGAGCTAGGAAAACCATCAGACATGACAACAGCAGTGAGAATAGCATTAATCCTATGTGCAATCATATACTTCTCAATAGGCTTATTTGGTTACTTATTATTTGGTGATGCAACTCAATCAGATATTCTCATAAATTTTGACCACAATGCTGATTCATCATTTGGTTCATTACTCAATACTTTGTTTATGGGATCAACTTCTGCTGTTTGTCTTGCTTTTGTGTTCCCAGGTTCTATTGTTTTAAGGGATATTCATGGTATATCAAAGAGAAGAGACAAAATTATAGCACTGGTAATGGTTATACTAGCTGTAGTAACAAGTGTGATTGCTATCTCCAACAAcatatataagctattttag 1098 0.3689 MSPVTGANLPLLSGSKVSSEPAATISGAVFNVATSIIGAGIMSLPATLKVLGVIPAFVLILVIAILAEISVEFLMRFTHSGETTTYAGVMREAFGPLGAIATQLCVVITNLGCLIMYLIIIADVLSGNKPDGEVHLGLLQQWFGIHWWNSREFALLITLIFILLPLVLYRRVESLKFSSAVSTLLAVAFVTICSVLAIVALVEGKTETPRLVPRLDHETTFFDLFTAVPVIVTAYTFHFNVHPIGFELGKPSDMTTAVRIALILCAIIYFSIGLFGYLLFGDATQSDILINFDHNADSSFGSLLNTLFMGSTSAVCLAFVFPGSIVLRDIHGISKRRDKIIALVMVILAVVTSVIAISNNIYKLF 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03409 365 PANTHER AMINO ACID TRANSPORTER 308 364 - -
Tsu05g03409 365 PANTHER AMINO ACID TRANSPORTER 3 307 - -
Tsu05g03409 365 Pfam Transmembrane amino acid transporter protein 25 309 IPR013057 -
Tsu05g03409 365 PANTHER AMINO ACID TRANSPORTER, TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN-RELATED 3 307 - -
Tsu05g03409 365 PANTHER AMINO ACID TRANSPORTER, TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN-RELATED 308 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03409 Tsu-Chr5 45380893 45384412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03409 308 364 Amino Acid or Auxin Permease AAAP Family AT3G56200 61.404 7.29e-16 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03409 - - cam:101493057 504.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g03409 05 45380893 45384412 Tsu05g03409 05 45380893 45384412 ECH
Tsu05g03409 05 45380893 45384412 Tsu03g01929 03 19964425 19966762 PCT