Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03398 ATGGAATCCTTGAATGCACGATTCTTTGTGTTACAAGTTATCATTTCGACTTTTGCCATCTCTCACATAGTGGCTAGTTCCAGTGATGGAGGTATGCAACCAAATGTCACAGTGGCTAAGGATGGCAGTGGCCAATATACCACGGTCACTGATGCCATCAACTCATATCCAACAAACTACCAAGGTAGATATACTATCTACGTTAAGGCCGGAATCTACAATGAGTACATAACTGTTGATGAGGGAAAACATAACATTCTATTGTATGGTGATGGTCCTACCAACACCATTATCACCGGAAGTAAGAACTGTAAGGATGGACTCCCAATGCCGCTAACTGCCACATTCACCACCTTTGCTAAATTTTTTACTGCCAAGTCCATTGCATTTGAGAATACTGCTGGTGCAATAGGTGAGCAAGCAGTAGCACTCCGCGTTGTAGGTTTTCACTCAGCATTCTTCAATTGTGCATTCCGGGGCTATCAAGACACTCTATACGTAGACCAGGGCTTTCAGTTCTACCGTAACTGTGAGATCTCAGGAACCGTGGATTTCATATATGGTCATTCAGCTACCTTGATCCAAAATTCTACAATTTTGGTGAGAAAGCCTGCTCAAGGACAAGACAATGTAGTTGTGGCAGATGGCACTGTCGGATACAGCAAGTTCAGTACCGGTATAGTCTTGCAAAACTGCTTTATCATTCCAGATATTGAGCTAAAGCCTTATCTGCAAACAGTCAAGACTTACTTGGCAAGACCATGGAAGCCATTTTCAACTGCAGTGTTCCTTAATAATTACATTGATGGTTTTGTTCGAAGAGATGGATATAGGATTTGGAGCAATGATCAACCAAACATCAAAACACCTTACTTTGCAGAATTTGGCAACACTGGACCTGGTGCTAATGCTACAGCAAGAGTCAAATGGGCCAAAGGCCTTATCAGCAAGAGGGCAGCTTCTATATTCACAGCTGAGAGGTTCATTCATGCTAGCACTTGGTTGCCCGCCACCGGCATTCCATACGATCATGGCTTGCATTAG 1044 0.432 MESLNARFFVLQVIISTFAISHIVASSSDGGMQPNVTVAKDGSGQYTTVTDAINSYPTNYQGRYTIYVKAGIYNEYITVDEGKHNILLYGDGPTNTIITGSKNCKDGLPMPLTATFTTFAKFFTAKSIAFENTAGAIGEQAVALRVVGFHSAFFNCAFRGYQDTLYVDQGFQFYRNCEISGTVDFIYGHSATLIQNSTILVRKPAQGQDNVVVADGTVGYSKFSTGIVLQNCFIIPDIELKPYLQTVKTYLARPWKPFSTAVFLNNYIDGFVRRDGYRIWSNDQPNIKTPYFAEFGNTGPGANATARVKWAKGLISKRAASIFTAERFIHASTWLPATGIPYDHGLH 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03398 347 PANTHER PECTINESTERASE 29 346 - -
Tsu05g03398 347 PANTHER PECTINESTERASE 29 346 - -
Tsu05g03398 347 Pfam Pectinesterase 35 331 IPR000070 GO:0030599|GO:0042545
Tsu05g03398 347 SUPERFAMILY Pectin lyase-like 33 345 IPR011050 -
Tsu05g03398 347 Gene3D - 29 346 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03398 Tsu-Chr5 45308736 45309913 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03398 38 346 Carbohydrate Esterase AT3G62170 47.284 1.20e-91 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03398 K01051 - gmx:100808559 395.971