Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03390 ATGCAACCAAATGTCAAAGTTGCTAAGGATGGCAGTGGCCAATATACCACGGTCACTGACGCCATCAACTCATATCCAACAAATTACAAAGGTAGATACACTATCTACGTGAAGGCCGGAATCTACAATGAGTACATAACTGTTGATGAGGGAAAACGTAACATTCTATTGTATGGTGATGGTCCTACCAACACCATTATCACCGGAAGAAAGAACAGTAAGGATGGACTCCCAATGCCGCTAACTGCCACATTTTCCACCTTTGCTGAAAATTTTACTGCCAAGTCCATTACATTTGAGAATACTGCTGGTGCAATAGGTGAGCAAGTGGTAGCACTACGAGTTGTAGGCGATCACTCAGCGTTTTATAATTGTGCATTTCGTGGTCACCAAGATACATTGTATGTAGACAAGGGCCGTCAGTTCTACCGCAACTGTGAGATATATGGAACAACTGATTTCATATATGGTCATTCCAGTACCTTAATCCAGAATTCTAAGATTTTGGTGAGAAAGCCCCTTGAAGGACATAGCAATGTTTTGGTGGCTGATGGCACTTCTTCATACAAAAATTTCAGAACTGGTATAGTCCTGCAAAACTGCTCTATCATGCCAGATGTTGACCTCAAGCCTTATCTGCAAACCGTCAAGACGTACTTAGCAAGACCGTGGCAGCAATTTTCAACGGCA 690 0.4246 MQPNVKVAKDGSGQYTTVTDAINSYPTNYKGRYTIYVKAGIYNEYITVDEGKRNILLYGDGPTNTIITGRKNSKDGLPMPLTATFSTFAENFTAKSITFENTAGAIGEQVVALRVVGDHSAFYNCAFRGHQDTLYVDKGRQFYRNCEIYGTTDFIYGHSSTLIQNSKILVRKPLEGHSNVLVADGTSSYKNFRTGIVLQNCSIMPDVDLKPYLQTVKTYLARPWQQFSTA 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03390 230 Gene3D - 1 230 IPR012334 -
Tsu05g03390 230 PANTHER PECTINESTERASE 3 230 - -
Tsu05g03390 230 SUPERFAMILY Pectin lyase-like 3 229 IPR011050 -
Tsu05g03390 230 Pfam Pectinesterase 4 229 IPR000070 GO:0030599|GO:0042545
Tsu05g03390 230 PANTHER PECTINESTERASE 3 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03390 Tsu-Chr5 45264591 45265414 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03390 7 229 Carbohydrate Esterase AT3G62170 50.667 6.40e-74 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03390 K01051 - gmx:100808559 308.145