Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03380 ATGGGTGCTTCTGCTTATGATCAGAGTTATAATGGTAATCTTGCGCCATTGGAATTGTCTAAGAAGAGGAAAACTAGGAGTAGAGGAAAAGGGAATAAATCTGTGGCTGAGATACTAGCTAAGTGGAGGGAATACAATGAGCGTCTATATGCTGGTAAAGATGATGGTAAACCGAAGCGTAAAGCGCCGGCGAAAGGTTCAAAGAAAGGGTGTATGAAAGGGAAAGGAGGACCTCAAAACTCAGAGAATAAGTATAGAGGTGTTAGACAGAGGACTTGGGGAAAATGGGTTGGTGAAATTAGAGAACCAAATAGAGGTAGTAGGCTTTGGTTAGGTACTTTTCCTACTGCTCAAGATGCTGCTCTTGCTTATGATTATGCTGCTAGAGCTATGTATGGTCCTTCGGCGCGGCTTAATTTCCCGAATATATCAGATTATAGTTCTATTAAGGAATATTTGAAGGATTCTTCATCAGATGTTGCTGCTCCTGCTGCTAGCTGTTGTTCTTCAGTGGTGACAACTCCTGCAACATCTGAGACAACAAGTCTGTCAAGTCATTCTGAGGTTTGTGCTGTTAAGGATGTTAAGATGTTTAAGATACCTGTCACTATGGATAATACTGTTGATGTTTGTTATGAAGTTTCGTCTCCAACTAGTAGAATTAAGCAGGAGCCAAAGGATGAGTTTGCTGATATCATTGACCCTAGTGGTGAAATCCAAGATGCTGAATCAGAAGGAATACTAAAGCAAAAGGATGAGCTTGCTGATATCATTGATCCTGGTGGTGGTGAAATCCAAGATGCCAAATTAGAAGAAACACAGAAAAATGATGTTATGCAGATTGGAGAGGGTGTATGTAATGACCAGTTGGACCAGATGGATCTTTCATGGATTGATAACTTTGACTTTGACATTGATTTTGACTTCAATGGTGATGATAACATGAAGAATTGTTCAATGGATGAGTTCTTTCAAGTGGATGAGCTTTTGGGGCATTTAGACAATAATCCAGTTGATGAGTCTGGGTTGATGCAAAGTTTGGATTGTGGACAAATGGGTTTTCCAGAAGAGAGTAATCCTCAGGTTGGGACTACTCCAAGCTTCTTTTATGAATTGGAAAATCCAGATGCTAAGCTGTTAGGGAGTTTGCCTCATATGGAACAACCAGACACAACATCAGGTGTCGATTATGCATTAGATTTCTATAAAATAGAAGAACCTGTGAACTGTAATGGTGCACTTGAAGATACACCATAtcttgatttgaattttgatgatgtgaatTATGCTTCAAGAGGAATGTAA 1305 0.3908 MGASAYDQSYNGNLAPLELSKKRKTRSRGKGNKSVAEILAKWREYNERLYAGKDDGKPKRKAPAKGSKKGCMKGKGGPQNSENKYRGVRQRTWGKWVGEIREPNRGSRLWLGTFPTAQDAALAYDYAARAMYGPSARLNFPNISDYSSIKEYLKDSSSDVAAPAASCCSSVVTTPATSETTSLSSHSEVCAVKDVKMFKIPVTMDNTVDVCYEVSSPTSRIKQEPKDEFADIIDPSGEIQDAESEGILKQKDELADIIDPGGGEIQDAKLEETQKNDVMQIGEGVCNDQLDQMDLSWIDNFDFDIDFDFNGDDNMKNCSMDEFFQVDELLGHLDNNPVDESGLMQSLDCGQMGFPEESNPQVGTTPSFFYELENPDAKLLGSLPHMEQPDTTSGVDYALDFYKIEEPVNCNGALEDTPYLDLNFDDVNYASRGM 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03380 434 Gene3D AP2/ERF domain 83 142 IPR036955 GO:0003700|GO:0006355
Tsu05g03380 434 ProSiteProfiles AP2/ERF domain profile. 84 141 IPR001471 GO:0003700|GO:0006355
Tsu05g03380 434 SUPERFAMILY DNA-binding domain 84 141 IPR016177 GO:0003677
Tsu05g03380 434 MobiDBLite consensus disorder prediction 1 15 - -
Tsu05g03380 434 Pfam AP2 domain 84 133 IPR001471 GO:0003700|GO:0006355
Tsu05g03380 434 CDD AP2 84 142 IPR001471 GO:0003700|GO:0006355
Tsu05g03380 434 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 17 394 - -
Tsu05g03380 434 SMART rav1_2 84 147 IPR001471 GO:0003700|GO:0006355
Tsu05g03380 434 PRINTS Ethylene responsive element binding protein signature 107 123 IPR001471 GO:0003700|GO:0006355
Tsu05g03380 434 PRINTS Ethylene responsive element binding protein signature 85 96 IPR001471 GO:0003700|GO:0006355
Tsu05g03380 434 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 17 394 - -
Tsu05g03380 434 MobiDBLite consensus disorder prediction 1 33 - -
Tsu05g03380 434 MobiDBLite consensus disorder prediction 50 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03380 Tsu-Chr5 45161089 45163346 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03380 21 430 AP2-EREBP Transcription Factor Family AT2G40340 35.646 7.82e-60 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Tsu05g03380 AP2 7.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03380 - K09286 mtr:MTR_5g083340 545.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g03380 05 45161089 45163346 Tsu05g03380 05 45161089 45163346 ECH