Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03379 ATGAACAGAAAAAGGCGTCTAAATCAATCGACGACTCCAATCGATTCTCACCCCTTCGAAGCAGTTACCTTCGGGTCATGGCATCCAGTGGAGTTCATAAAAGTTAAGTCAGGAACTGTAACCATACATTTCGCAGATAATCACCATATGGTTATGGACAAAGGTACTTTATCAGACATTCGTATGAGGTCAAGGAAAACTACGGTGTCAGATTGCTCCTGTTTCTTACGTCCTGGAATCGACATCTGCGTGCTATCACCCCCTCAACGAGCCGCTGACTCAGTTGGATCAAAACTCGAGCCCGTTTGGATGGATGCTAGAATAAGTTCTATACAGAGAAAGCCTCATGGCTCGGAGTGCTCGTGTCAGTTTTTCGTCAATTTCTATGTTGATCAAGGTTCACTTGGTTTAGAGATGAGAACTCTTTGTAAGGATATCAAAGTATTTGGACTCGATCAGATCTCCATCCTCCAAAGAATTGAACATAGTCCTTGTGAAAATAAGCCCTACCGGTGGTCTTCATCCGAGGATTGCTCTTCATTGCCACACACTAAATTGCTTTTGGGGAAATTTTTAACCGATCTTTCATGGTTAATTGTTACATCGGTTCTCATGAAGGTTGGCTTCTGTGCAAGATCTGTTGAAAACAAGATGGTGTATCAAGTTTTGGGAGGTGATAATAATAGTAGCTCTTCGTCGAACACCGAGTCTCATATTGATGTTATCGGTTTCAAAAACGACAATGGCATGTTAGTACCTATTGCTTCTCAAGTTGCTATAACTAACACCAAGAGAGTTGAACAAGCACAAGAATCCCATACGGATGAAGCGTCGCCGTCTTATAATGTTGACGGCTTACGACGCTCCAAACGCAGGCATGTACAACCCGATCGTTACCTTGGCTGTGAAGTTAAAGAATTGGATGTTGGTTCCTTTAGAAACAGGCCACCGGTTAGGATAGATACATCCACTAAAGAAGATGACTTGCCGTTATCGTGCTTGTTTCGTTTGCAGCAACAGAAGAGTCCAGAAAAGATCACCGACAAATGTCAGAAGCTCAACCTACCGAATCCCAGCCGGGAGCTTCTAGTGTACAATAGGAGGGCTAAAAATCGTGAGGTGAAGAAGTCTCGTGATGTTGATCATAACGAACATCAAAATCCACTTGCTATTATCCCATTTACTAATCAAGATGCTGAACCAATAGCCGTTGAGCCTTGCGATCAAAATGGCAATGTTGCTAGAAGTGGTGAACATGCATCATCtgaaatttcttcaaaatatcGTCATTTGATTAATACTCCTAAACCAAGGAAAAACATTAATTTGTTAGATTTTCCTGAAAAGTCAGAAGATGCTGCGAAGAGCGACGATGTTTCTTCAAGATGTCAATTTTTTGGAACCCCTAAATTACAAAGGAAGAGTTTAGGTGATTTGGGTGATATGGATCTTGGAAATAGATGGGAAGGGATAAAAAGGAAAACCAACAAAGGATTTAAGGAGGGGAAATATCGTTCAACATATTTAAGAAATCCCGGCGAAGGTGGAACTCACAAATATAAAGATAGAACATTAAATGCAGCTGCATACAAGAATTtgataaattcatatttatcaaatattaataCAACAATACCGGTCGAAGAAACCCCTATTACTGACCAGTGGAAGAAATGTAACACAACAAACAATGTTGGACAAAAAGAGGAGACAAATATTTCTCATGAAGAATatgagaaagaaaaagctgaaGAGGAAATGTTGTGGAAAGAACTTGAAGTCGGACTGGCATCAGTTTATTTCGATGACTCGGAGGTTTCAAATGCAGACGCTTCTGCCGAGGCCGAGGAAAAGTTGAAAGAAGTTTGTGAACATGATAATAGATTGGATGAAGAAATTGGAATATACTGCATTAGATGTGGCTTTGTGACCACCCATATCAGAGATGTTAATCCAATCTTTGTTGATAAGGCAGTGTGGCGACAAGATGAGAAGCCGTGTGATGGAGGAGAAAATAAAGAAGAGCCCAACATGgctgatgaagatgatgatttcCATTTTTTCCCAACTGATGCTAATCCTGAAGAACCGATATCGAAAGAAAACGAAAGCGTTTGGTCATTAATTCCCGAACTCAAAGAAAAGTTGCATGTGCACCAAAAGAAAGCTTTTGAGTTTCTTTGGCAAAACATTGCAGGGTCAACAAATCCAGGACTAATTGAAGCAGAATCCAAAAAAAGAGGTGGCTGTGTGATATCTCATACTCCTGGAGCCGGAAAAACTTTTCTCATCATCGCTTTTCTTGTCAGCTACTTGAAGTTATTCCCTGGGAAGAGACCTCTCGTTCTTGCTCCGAAAACTACGCTCTATACTTGGTATAAAGAATTTATCAAGTGGGAGATTCCTATACCGGTGTACTTGATTCACGGTCGTAGAACCTATAGGGTGTTCAAGCAGAACTCAGTTGCGGTTCTTCCTGGAGTTCCCAAGCCTACTGATGATGTCAAGCATGTTTTGGATTGCCTTGAGAAGATACAAAAATGGCATTCGCATCCGAGTGTTCTAATCATGGGCTACACTTCGTTTTTAACATTGATGCGAGAGGATTCGAAGTTTGCACACAGAAAGTTTATGGCGAAAGTGTTGAGGGAAAGTCCTCAACTCTTAGTACTTGATGAAGGTCACAATCCTAGAAGCACTAAATCAAGGTTgcgaaaatgtttgatgaaagtGCAAACCGAATTGAGAATATTACTTTCCGGTActttgtttcaaaataatttctGTGAATACTTCAACACTCTATGCTTGGCAAGACCAACATTTGCTCACGAAGTGTTGAAAGCATTAGACCCTAAatacaagaagaaaaagaaaggagtAGCAGGAAAAGGAGCAGAAAAAGCGCAATATTTGATCGAGTCACGGGCTAGAAAATTCTTCTTAGATACAATCGCTAAGAAAATTGACTCAAATGTTGGTGATGAAAGGCTGCAAGGCTTGAACATGTTGAGAAATGTGACAAATGGTTTTATCGATGTTTATGAAGGTGGAAGTGCTGATGGTTTACCTGGTTTACAAATTTATACATTGCTAATGAACACAACCGATATACAACATGAGATTCTGAAGAAACTTCACAGCGACATGGCTAAGTGCAGTGGTTACCCTCTTGAGTTAGAGCTTTTGATAACTCTCGGATCAATACATCCTTGGTTGGTCAAAACCGCAGTATGTTCTCAGAAGTTTTTGACAAAGGAGCAATTGAGTGATCTAGATAAGTAcaaatttgatttgaaaattGGTTCAAAAGTAAGATTTGTTTTGAGCCTTATCTACCGTGTTGTCAAGAACGAAAAGGTTCTTATCTTTTGCCACAACATTGCTCCTGTGAAATTGTTTCAAGAATATTTTGAGAAGTTCTTTGGATGGCAAAAAGGCCGTGAAGTTTTAGTACTAACTGGGGAACTCGAGCTCTTCGAACGTGGGAAAATAATGGATAAATTTGAGGAGCCCGGTAGTGTATCTAAGATACTACTTGCTTCAATTACAGCCTGTGCTGAAGGCATTAGTTTGACAGCAGCATCTCGTGTGATTATGTTGGATTCAGAGTGGAACCCTTCAAAAACAAAGCAAGCTATTGCACGTGCATTTCGTCCCGGACAGCAGAAAATGGTTTATGTTTATCAGCTCTTGGTGACAGGTTCATTGGAGGAAGATAAATACCGAAGAACCACGTGGAAAGAGTGGGTGTCGAGTATGATTTTCAGCGAGGCGTTTGTCGAGGATCCTTCTCGTTGGCAAGCTGAGAAGATTGAAGATGATATTCTAAGAGAAATGGTTGAGGAGGATAAGTCTAAATCATTTCATATGATTATGAAGAATGAAAAAGCTTCAACAAACAATAGATAA 3912 0.3893 MNRKRRLNQSTTPIDSHPFEAVTFGSWHPVEFIKVKSGTVTIHFADNHHMVMDKGTLSDIRMRSRKTTVSDCSCFLRPGIDICVLSPPQRAADSVGSKLEPVWMDARISSIQRKPHGSECSCQFFVNFYVDQGSLGLEMRTLCKDIKVFGLDQISILQRIEHSPCENKPYRWSSSEDCSSLPHTKLLLGKFLTDLSWLIVTSVLMKVGFCARSVENKMVYQVLGGDNNSSSSSNTESHIDVIGFKNDNGMLVPIASQVAITNTKRVEQAQESHTDEASPSYNVDGLRRSKRRHVQPDRYLGCEVKELDVGSFRNRPPVRIDTSTKEDDLPLSCLFRLQQQKSPEKITDKCQKLNLPNPSRELLVYNRRAKNREVKKSRDVDHNEHQNPLAIIPFTNQDAEPIAVEPCDQNGNVARSGEHASSEISSKYRHLINTPKPRKNINLLDFPEKSEDAAKSDDVSSRCQFFGTPKLQRKSLGDLGDMDLGNRWEGIKRKTNKGFKEGKYRSTYLRNPGEGGTHKYKDRTLNAAAYKNLINSYLSNINTTIPVEETPITDQWKKCNTTNNVGQKEETNISHEEYEKEKAEEEMLWKELEVGLASVYFDDSEVSNADASAEAEEKLKEVCEHDNRLDEEIGIYCIRCGFVTTHIRDVNPIFVDKAVWRQDEKPCDGGENKEEPNMADEDDDFHFFPTDANPEEPISKENESVWSLIPELKEKLHVHQKKAFEFLWQNIAGSTNPGLIEAESKKRGGCVISHTPGAGKTFLIIAFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWEIPIPVYLIHGRRTYRVFKQNSVAVLPGVPKPTDDVKHVLDCLEKIQKWHSHPSVLIMGYTSFLTLMREDSKFAHRKFMAKVLRESPQLLVLDEGHNPRSTKSRLRKCLMKVQTELRILLSGTLFQNNFCEYFNTLCLARPTFAHEVLKALDPKYKKKKKGVAGKGAEKAQYLIESRARKFFLDTIAKKIDSNVGDERLQGLNMLRNVTNGFIDVYEGGSADGLPGLQIYTLLMNTTDIQHEILKKLHSDMAKCSGYPLELELLITLGSIHPWLVKTAVCSQKFLTKEQLSDLDKYKFDLKIGSKVRFVLSLIYRVVKNEKVLIFCHNIAPVKLFQEYFEKFFGWQKGREVLVLTGELELFERGKIMDKFEEPGSVSKILLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKMVYVYQLLVTGSLEEDKYRRTTWKEWVSSMIFSEAFVEDPSRWQAEKIEDDILREMVEEDKSKSFHMIMKNEKASTNNR 1303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03379 1303 Coils Coil 568 588 - -
Tsu05g03379 1303 CDD DEXHc_ATRX-like 716 942 - -
Tsu05g03379 1303 Pfam SNF2-related domain 712 945 IPR000330 GO:0005524|GO:0140658
Tsu05g03379 1303 Pfam Helicase conserved C-terminal domain 1104 1220 IPR001650 -
Tsu05g03379 1303 CDD SF2_C_SNF 1096 1232 - -
Tsu05g03379 1303 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 19 1300 - -
Tsu05g03379 1303 MobiDBLite consensus disorder prediction 664 690 - -
Tsu05g03379 1303 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 19 1300 IPR044567 GO:0080188
Tsu05g03379 1303 MobiDBLite consensus disorder prediction 408 433 - -
Tsu05g03379 1303 MobiDBLite consensus disorder prediction 664 699 - -
Tsu05g03379 1303 MobiDBLite consensus disorder prediction 414 429 - -
Tsu05g03379 1303 Gene3D - 1026 1303 IPR027417 -
Tsu05g03379 1303 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 741 941 IPR014001 -
Tsu05g03379 1303 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 700 943 IPR027417 -
Tsu05g03379 1303 MobiDBLite consensus disorder prediction 265 289 - -
Tsu05g03379 1303 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1107 1268 IPR001650 -
Tsu05g03379 1303 SMART ultradead3 712 950 IPR014001 -
Tsu05g03379 1303 MobiDBLite consensus disorder prediction 265 279 - -
Tsu05g03379 1303 Gene3D - 691 982 IPR038718 -
Tsu05g03379 1303 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1021 1284 IPR027417 -
Tsu05g03379 1303 SMART helicmild6 1132 1221 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03379 Tsu-Chr5 45139288 45146403 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03379 1153 1239 RAD5 or RAD16-like Gene Family AT5G22750 41.379 1.59e-11 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Tsu05g03379 SNF2_N 6.2e-17 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03379 K10875 - gmx:100811703 1785.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g03379 05 45139288 45146403 Tsu05g03379 05 45139288 45146403 ECH
Tsu03g01908 03 19765538 19770397 Tsu05g03379 05 45139288 45146403 PCT