Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03373 ATGGGTGGAAATTCACCATGTGCTTCATGCAAGCTTTTGAGACGCAGATGTGCAAAAGATTGCACTTTTGCTCCTTATTTTCCTTCTCATGAACCCCAAAAGTTTGCTATTGTTCATAAGGTTTTTGGGGCTAGCAACGTTAGCAAAATGTTGCAGGAGCTACCAATTCACCAAAGAGCAGATGCAGTAAGCAGTTTAGTCTATGAAGCAAATGCAAGAGTGAGAGATCCAGTTTATGGTTGTGTTGGAGCAATATCTTACTTACAAAATCAAGTTTCTGAACTTCAAATGCAACTTGCAGTTGCTCAAGCAGAAATACTTTGCATCCAAATGCAAAATGAACAAGTGATTCCAACACAAGAAATTAATCAAGATCAGAAATCTTATTTTATCCAAGATGAACTCACTCAATATCTTAATTATGGTTCTTCttctagtaataataataataataataataatgtaattcATGATTCTCTTAAGAGAGATAATATGTATGGACATGATATGGTTTCTTGA 519 0.3372 MGGNSPCASCKLLRRRCAKDCTFAPYFPSHEPQKFAIVHKVFGASNVSKMLQELPIHQRADAVSSLVYEANARVRDPVYGCVGAISYLQNQVSELQMQLAVAQAEILCIQMQNEQVIPTQEINQDQKSYFIQDELTQYLNYGSSSSNNNNNNNNVIHDSLKRDNMYGHDMVS 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03373 172 MobiDBLite consensus disorder prediction 142 159 - -
Tsu05g03373 172 Coils Coil 85 105 - -
Tsu05g03373 172 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Tsu05g03373 172 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 164 - -
Tsu05g03373 172 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Tsu05g03373 172 PANTHER LATERAL ORGAN BOUNDARIES (LOB) DOMAIN PROTEIN 1 164 - -
Tsu05g03373 172 MobiDBLite consensus disorder prediction 142 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03373 Tsu-Chr5 45088873 45090469 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03373 3 131 AS2 family AT2G30130 79.699 9.96e-76 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tsu05g03373 LOB 5.1e-42 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01902 03 19661613 19662419 Tsu05g03373 05 45088873 45090469 ECH
Tsu05g03373 05 45088873 45090469 Tsu05g03373 05 45088873 45090469 ECH
Tsu03g01902 03 19661613 19662419 Tsu05g03373 05 45088873 45090469 PCT