Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03359 ATGAATGATCCTAGATCAAAGATGATGATTTCTCCTGGTTTATTACCAACTGAATCATTACTAGATTCATTGGTTTTAATAACCAATGAAGTTAGTTCAATTGAAAATTTTCCATTAgtacaaattaaaaatgtatcatcTATGATAAGAAGGATTAAGCTTCTTTCATCTTTGTTTGAAGAGATTCAAGAATCAGATACACAACTTCCACCATCATCAATTCTTTGTTTCACAGAAATATTTTCAGTGATTACAAGAGTGAAGATTTTGATTCAAGAGTTGAAAGATGGAAGTTCTCTTTGGAGTCTAATACAATTAGAGTTcatttcaaatcaattttttgtgcTTGTAAAAGAATTTGGAAGAGCTTTTGATATTCTTCCTTTGAATTTGCTTAATATAACACATGATATAAAGGAGCAAATTGAGCTTGTGCATAAACAAGCTAAGAGAGTTGAATTGTTCATTGATCCTAGAGAAGTTCAAAGAAGAGAAAAGCTTTTACAAGTAATGTCGAAAAattgtttacaaaataataagaacaatcaagggtttattgattttttgaaaGTGGAAGAAATTATGAGTAGCATTGGTTTGATAACTTTATCGGATTATGTTGAAGAAATATCAAAGTTAGAAGTTGAAGCTCAGAATCAAGCAGGCACGGGTGGATTAATTGtcgtctcaaatataaacaatcTCATGTTGCTCGTTTCGTATACCAAATCAATGGTATTCCGAAACGGAGATAAAAGTGATGGCAAATATTCGGACGAGAGTAAGTCATCGTTATCTATGTTTTTATACAGCAAAAGTAAAGTATATGATAATGatagttcttcatcttctttttctcaATCCATGATGTCGTCAACAATTAATATTCCGGATGAATTCCGTTGTCCGATTTCACTAGACCTAATGAGGGATCCTGTGATTGTTTCATCAGGACATACTTATGACCGAATTTCGATTGCAGAATGGATAAATTCTGGTCACCACACTTGTCCTAAAAGTGGACAAAGACTAATTCACACTGCATTAATACCAAACTATGCATTGAAGAGCCTTGTTCATCAATGGTGCAATGAAAACAATGTCTCGGCGAACGAACCAAAGGGTAACAACAATGGTGGCAGTAGCAGCAAGAGGCACAAGAATGAGAATGCAATTGATCACATTTCAGCAAACAAAGCATCAAAAGATGCTGTCAAAATGACAGCAGAGTTTCTTGTTGGAAAATTAGCAACCGGTTCAACCGATATTCAAAGACAATCCGCATACGAGATTCGTCTGCTCGCGAAAACTGGTATGGACAACCGAAGAATCATAGCCGAGGTAGGCGCTATTCCATTTCTAGTAACACTTTTAGTATCCAAAGATTCAAGAATCCAAGAACACGTTGTAACCGCCTTGTTCAACCTATCGATCTACGACAACAACAAGATTCTAATCATGGCAGCCGGAGCTGTCGATAATATAGTCGAAGTACTCGAATCGGGAAAAACAATGGAGGCAAGAGAAAATGCTGCAGCAGCAATATATAGTTTATCTATGTTAGATGATTGTAAAGTTCAAATTGGAGCAAGTTCAAAAGCAATACCGGCATTAGTGTTACTTCTAAAAGAAGGTACACCAATTGGTAAAAGAGATGCTGCTATTGCATTGTTTAATCTTGCAGTTTATAATCCTAATAAGTTAAGTATTGTTAAAAGTGGAGCAGTTACTTTACTTGTGGAGTTATTGATGGACGATAAAGCCGGTATAACAGATGATTCATTGGCGGTGCTTGCCGTGTTATTAGGTTGTTCACAAGGGTTAGAAgagataaaaaatagtaaaagtttGGTGCCTATGCTTATTGATCTTTTGAGATTTGGTTCTGTTAAAGGGAAGGAAAATTCAATAACTGTTTTACTTGGATTGTgtaaagaagaaggagaattaGTTGCAAGGAAATTGTTGGCAAATCCAAGGAGTATTCCATCTCTTCAAAGTTTGGCTGCTGATGGTTCATTGAGAGCTAGAAGAAAAGCTGATGCATTGCTTAGGTTGCTTAATAGGTGTTGTTCTCAACCTCAACATTCTTTGTGA 2097 0.3314 MNDPRSKMMISPGLLPTESLLDSLVLITNEVSSIENFPLVQIKNVSSMIRRIKLLSSLFEEIQESDTQLPPSSILCFTEIFSVITRVKILIQELKDGSSLWSLIQLEFISNQFFVLVKEFGRAFDILPLNLLNITHDIKEQIELVHKQAKRVELFIDPREVQRREKLLQVMSKNCLQNNKNNQGFIDFLKVEEIMSSIGLITLSDYVEEISKLEVEAQNQAGTGGLIVVSNINNLMLLVSYTKSMVFRNGDKSDGKYSDESKSSLSMFLYSKSKVYDNDSSSSSFSQSMMSSTINIPDEFRCPISLDLMRDPVIVSSGHTYDRISIAEWINSGHHTCPKSGQRLIHTALIPNYALKSLVHQWCNENNVSANEPKGNNNGGSSSKRHKNENAIDHISANKASKDAVKMTAEFLVGKLATGSTDIQRQSAYEIRLLAKTGMDNRRIIAEVGAIPFLVTLLVSKDSRIQEHVVTALFNLSIYDNNKILIMAAGAVDNIVEVLESGKTMEARENAAAAIYSLSMLDDCKVQIGASSKAIPALVLLLKEGTPIGKRDAAIALFNLAVYNPNKLSIVKSGAVTLLVELLMDDKAGITDDSLAVLAVLLGCSQGLEEIKNSKSLVPMLIDLLRFGSVKGKENSITVLLGLCKEEGELVARKLLANPRSIPSLQSLAADGSLRARRKADALLRLLNRCCSQPQHSL 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03359 698 SMART arm_5 521 562 IPR000225 GO:0005515
Tsu05g03359 698 SMART arm_5 604 645 IPR000225 GO:0005515
Tsu05g03359 698 SMART arm_5 479 520 IPR000225 GO:0005515
Tsu05g03359 698 SMART arm_5 563 603 IPR000225 GO:0005515
Tsu05g03359 698 SMART arm_5 438 478 IPR000225 GO:0005515
Tsu05g03359 698 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 1 17 695 - -
Tsu05g03359 698 SUPERFAMILY RING/U-box 284 369 - -
Tsu05g03359 698 MobiDBLite consensus disorder prediction 369 385 - -
Tsu05g03359 698 Pfam U-box domain 296 367 IPR003613 GO:0004842|GO:0016567
Tsu05g03359 698 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 449 491 IPR000225 GO:0005515
Tsu05g03359 698 PANTHER U BOX DOMAIN-CONTAINING 17 695 - -
Tsu05g03359 698 MobiDBLite consensus disorder prediction 369 388 - -
Tsu05g03359 698 SMART Ubox_2 299 362 IPR003613 GO:0004842|GO:0016567
Tsu05g03359 698 CDD RING-Ubox_PUB 300 342 IPR045210 -
Tsu05g03359 698 Gene3D - 387 697 IPR011989 -
Tsu05g03359 698 ProSiteProfiles U-box domain profile. 295 369 IPR003613 GO:0004842|GO:0016567
Tsu05g03359 698 SUPERFAMILY ARM repeat 408 687 IPR016024 -
Tsu05g03359 698 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 295 371 IPR013083 -
Tsu05g03359 698 Pfam Armadillo/beta-catenin-like repeat 440 477 IPR000225 GO:0005515
Tsu05g03359 698 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 533 575 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03359 Tsu-Chr5 45001426 45003522 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03359 19 697 U-box Gene Family AT3G46510 36.257 1.59e-126 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03359 - - cam:101513231 1087.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g03359 05 45001426 45003522 Tsu05g03359 05 45001426 45003522 ECH