Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03357 ATGAAGGGCTATGAACCAAGGTCAAGTTCCTCTTGTGCAGCTtgcaaatttctcaaaagaagaTGCATACCAAATTGTATATTTGCACCATACTTTCGTGCCGACGAGTGCAAGAAATTTGCGAAAGTTCACAAAGTATTTGGAGCAAGTAATGTAAGCAAGATCCTCATTGAAGTGCCAGAAGAACAAAGGGAAGAAACTGTGAATTCTTTGGCTTATGAAGCTGATGCAAGGCTTAGAGATCCTGTTTATGGATGCATAGGTGCTATAGCACTTTTGCAAAGGAAAATGATTGAACTTCAACATGATCTTGCCATTGCTAAGGATCGTCTCGCTCGTTGTGCAGCCGCTGCTGCTGCtactccttcttcttcttctttttctaatGATATGTCGAATTCGAATGTTAGTTTGCCACCTTTTCCTGAGTTTTACAGTTGCAGTGATTTTAATGATAATTTTAGCCACAGTTCTTCATCTCAATCGTTTAGTCGAAATGAAACAGGTGACGATTTCCTTCAAATCCCTTATATATTTTGA 540 0.3648 MKGYEPRSSSSCAACKFLKRRCIPNCIFAPYFRADECKKFAKVHKVFGASNVSKILIEVPEEQREETVNSLAYEADARLRDPVYGCIGAIALLQRKMIELQHDLAIAKDRLARCAAAAAATPSSSSFSNDMSNSNVSLPPFPEFYSCSDFNDNFSHSSSSQSFSRNETGDDFLQIPYIF 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03357 179 Coils Coil 90 110 - -
Tsu05g03357 179 Pfam Lateral organ boundaries (LOB) domain 11 108 IPR004883 -
Tsu05g03357 179 PANTHER LOB DOMAIN-CONTAINING PROTEIN 21 1 173 - -
Tsu05g03357 179 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 173 - -
Tsu05g03357 179 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03357 Tsu-Chr5 44954827 44955532 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03357 1 111 AS2 family AT3G11090 79.279 6.21e-64 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tsu05g03357 LOB 1.3e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03357 - - gmx:100777635 260.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g03357 05 44954827 44955532 Tsu05g03357 05 44954827 44955532 ECH