Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03356 atggattcacctcttcatcatcatcttcaagaAACCAAACCCACCGCTAACACCGTTGTTACTACCACTCTAAGTGAAACATCTAACAATAGCACTGATGATAATAAATCAACAGACGATAATAAATCATCAGTGCTGTTGTTAGATAATAATAACAGCACAGCCAACACcgacaataataacaataaacagAATCGTAAATGCAAAGGTAAAGGTGGACCAGATAACAATAAGTTTCGATATCGTGGTGTTAGACAACGTAGTTGGGGTAAATGGGTTGCTGAAATTCGTGAACCACGTAAACGTACTCGTAAATGGCTTGGTACTTTTTCAACTGCTGAAGATGCTGCTAAAGCTTATGATCGTGCTGCTATTATTCTTTATGGTTCTAGAGCTCAACTTAATCTTCAACCTTCAGCTTCTAATTCAAATaactcttcatcttcttcttcctcttcttctcgtttaaattcttcaaattcttcCAATAATACCCTTCGTCCTTTACTTCCTCGTCCTTCTGGTTTCTCTTTTACTTACCCTTTTGCTTTTTATAATCAttttcatcatcataatcattatAATCCTCATCAAGAAATGGTGCAACTTCAAcaacaatatcatcatcaacaacatcaacaacagcTATATCATCAAGATTTTGAACATGCAAGTGGTGAATCTGTTCGATCAGTTACATCGTATCAGAATCATGTTAATGGTAATAAGTATGATGAAGAAATGCATGCACAACATGTTTTGAATCAGCAACAGAGCCAggtaaataataatattcagaATTATGTGGTTGAGAGTTCTTTGGTGGGGTCATCAAGATTTGAGGGTTCttctcaaaataataatatggatGGAACAGTGGTGGATCCAGATCCAGATTCTATGTGGCCAGCTTTGACAAATGAAGATGATTATACAACAACTAGTTTATGGGATTATAATGAGCCTTATAATGATCCtttcttctttgatttttga 996 0.2902 MDSPLHHHLQETKPTANTVVTTTLSETSNNSTDDNKSTDDNKSSVLLLDNNNSTANTDNNNNKQNRKCKGKGGPDNNKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFSTAEDAAKAYDRAAIILYGSRAQLNLQPSASNSNNSSSSSSSSSRLNSSNSSNNTLRPLLPRPSGFSFTYPFAFYNHFHHHNHYNPHQEMVQLQQQYHHQQHQQQLYHQDFEHASGESVRSVTSYQNHVNGNKYDEEMHAQHVLNQQQSQVNNNIQNYVVESSLVGSSRFEGSSQNNNMDGTVVDPDPDSMWPALTNEDDYTTTSLWDYNEPYNDPFFFDF 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03356 331 Gene3D AP2/ERF domain 79 137 IPR036955 GO:0003700|GO:0006355
Tsu05g03356 331 PRINTS Ethylene responsive element binding protein signature 103 119 IPR001471 GO:0003700|GO:0006355
Tsu05g03356 331 PRINTS Ethylene responsive element binding protein signature 81 92 IPR001471 GO:0003700|GO:0006355
Tsu05g03356 331 CDD AP2 80 137 IPR001471 GO:0003700|GO:0006355
Tsu05g03356 331 SUPERFAMILY DNA-binding domain 80 138 IPR016177 GO:0003677
Tsu05g03356 331 MobiDBLite consensus disorder prediction 41 63 - -
Tsu05g03356 331 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ABI4 30 323 - -
Tsu05g03356 331 SMART rav1_2 80 143 IPR001471 GO:0003700|GO:0006355
Tsu05g03356 331 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 30 323 - -
Tsu05g03356 331 MobiDBLite consensus disorder prediction 25 82 - -
Tsu05g03356 331 MobiDBLite consensus disorder prediction 137 170 - -
Tsu05g03356 331 Pfam AP2 domain 80 128 IPR001471 GO:0003700|GO:0006355
Tsu05g03356 331 MobiDBLite consensus disorder prediction 64 82 - -
Tsu05g03356 331 ProSiteProfiles AP2/ERF domain profile. 80 137 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03356 Tsu-Chr5 44943916 44944911 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03356 66 174 AP2-EREBP Transcription Factor Family AT2G40220 78.182 3.91e-38 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Tsu05g03356 AP2 2.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03356 K09286 - jre:108991752 202.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g03356 05 44943916 44944911 Tsu05g03356 05 44943916 44944911 ECH