Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03354 ATGATTAGCGCAAACTCAAATTCCAATTCCAATGGCGGTGTTGATGAAAACGGTGATAAAGTGAAAGGTTCATGGAGTCCACAAGAAGATGAAACATTGGTGAAATTGGTGAATGAATACGGTGCAAGAAACTGGTCTGTTATAAGCAACGGAATCCCTGGTCGTTCTGGAAAATCATGCCGTCTACGGTGGTGTAATCAGCTGAGTCCCGACGTTCAACACCGTCCTTTTACTCCGGCGGAAGATAACATCATAATTCAAGCACACGCAGTTCATGGAAACAAATGGGCGACGATTTCGCGTCTTTTACCAGGTAGAACTGATAACGCGATTAAAAACCACTGGAATTCGACTCTCCGCCGTCGTCGTACGGAGGAGGCGGTGAATCCTTTAATGCCGGCGGTGGTTTCCTCCGCCGTGAATATCGGAAAACGTGCGTCAAATATGTATGACGGTTATAATAACAGTTTGTTGGATCTCGGTTACGGTTATAAACGGCAATGTGTTGAGactaatactaataataacGGTTCACGTGACGGTGAAGAAACTGTTACGGAAGAAGAAGATGTGGGAAATGGTGTTACGGTTATGACGTCGTTAAGTTTGTTTCCACCTGGTGAGAAATTgatgaaagaagagaaagagaaaaaagaaaaggaaagagattttgatgataatttgaagttaCTGGGAAATGATAATTTGAGGTCTATTATTCAGCGTATGATAGCAGAAGAAGTTAGGAATTATGTTGATAACATGCGCCTTGATGGGTTTCAACTTGGAACTCCCGATTCAAGAAAGtga 810 0.3963 MISANSNSNSNGGVDENGDKVKGSWSPQEDETLVKLVNEYGARNWSVISNGIPGRSGKSCRLRWCNQLSPDVQHRPFTPAEDNIIIQAHAVHGNKWATISRLLPGRTDNAIKNHWNSTLRRRRTEEAVNPLMPAVVSSAVNIGKRASNMYDGYNNSLLDLGYGYKRQCVETNTNNNGSRDGEETVTEEEDVGNGVTVMTSLSLFPPGEKLMKEEKEKKEKERDFDDNLKLLGNDNLRSIIQRMIAEEVRNYVDNMRLDGFQLGTPDSRK 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03354 269 ProSiteProfiles Myb-like domain profile. 17 68 IPR001005 -
Tsu05g03354 269 ProSiteProfiles Myb-like domain profile. 69 119 IPR001005 -
Tsu05g03354 269 PANTHER TRANSCRIPTION FACTOR MYB44-LIKE 4 226 - -
Tsu05g03354 269 SUPERFAMILY Homeodomain-like 19 115 IPR009057 -
Tsu05g03354 269 MobiDBLite consensus disorder prediction 1 15 - -
Tsu05g03354 269 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 68 IPR017930 -
Tsu05g03354 269 CDD SANT 76 119 IPR001005 -
Tsu05g03354 269 Gene3D - 76 122 - -
Tsu05g03354 269 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 123 IPR017930 -
Tsu05g03354 269 PANTHER MYB PROTEIN-RELATED 4 226 - -
Tsu05g03354 269 MobiDBLite consensus disorder prediction 1 27 - -
Tsu05g03354 269 Gene3D - 21 73 - -
Tsu05g03354 269 Pfam Myb-like DNA-binding domain 22 68 IPR001005 -
Tsu05g03354 269 Pfam Myb-like DNA-binding domain 76 118 IPR001005 -
Tsu05g03354 269 SMART sant 21 70 IPR001005 -
Tsu05g03354 269 SMART sant 73 121 IPR001005 -
Tsu05g03354 269 CDD SANT 24 66 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03354 Tsu-Chr5 44912272 44913366 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03354 18 122 MYB Transcription Factor Family AT5G67300 71.429 1.66e-52 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu05g03354 Myb_DNA-binding 4.5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03354 - - cam:101514420 349.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g03354 05 44912272 44913366 Tsu05g03354 05 44912272 44913366 ECH