Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03348 ATGTGCAGTGGTTCAAAAAGTAAACTTTCTTCATCAGATTACAACATGGAGGGTAAGCTTCAGAAGGGAATCCACAACTCCTCAATCTTGCTTGAATTGTCTGCATCTGATGATTTTGATGCTTTCAAGAGAGAAGTAGATGAGAAGGGTTTGGATGTGAATGAAGAAGGCTTTTGGTATGGTAGAAGAATCGGATCGAAGAAGATGGAATCTGAAAAGAGGACTCCTCTCATGATTGCTTCCTTGTTTGGAAGCACTAAGGTGCTCAAGTATATTGTTTTGACAGGGAAGGCTGATGTCAACCGAGTTTGTGGCTCTGATATGGTCACTGCTCTTCATTGTGCTGTTGCTGGTGGTTCTGAATTTTCGCTCGAGGTTGTCAAGCTCTTGCTTGATGCTGGGGCAGATGCTGATTGTCTTGATGCTAATGGTAACAAACCGGTCGATCTGATTGCGCCTGCCTTTAATACTTTGTCCAAATCGCGTAGGAAGGTGTTGGAGTTGTTTTTGAGAGGTGAGGTTAGTGCTGAAGTTGTCCAAGGAGAGATGGATGCTTCTTTCTCATTGAAGAAAGAAGGTGGTGATAAGAAAGAGTATCCTATTGATATATCGTTGCCGGACATAAACAACGGTGTATATGGATCAGATGACTTTAGGATGTACAGTTTCAAGGTGAAGCCGTGCTCAAGGGCTTATTCTCATGATTGGACCGAGTGTCCGTTTGTTCATCCAGGTGAGAACGCAAGGAGAAGAGACCCAAAGAAATATCCTTACAGTTGTGTTCCTTGCCCAGAGTTTCGCAAAGGATCCTGCCAGAAAGGGGATTCTTGCGAGTATGCACATGGTGTTTTCGAGTCATGGCTACATCCTGCACAATACCGAACAAGGCTTTGCAAAGACGAGACTGGCTGCAACAGGAAAGTCTGCTTCTTTGCTCACAAGCCCGAAGAGTTGCGCCCCGTGTATGCTTCCACCGGATCAGCTATGCCTTCACCAAAGTCCTATTCAGCTAGTGCAATGGACATGACATCGATGAGTCCGTTATCTCTTAGCTCCTCATCTTTGCCTATGTCAACTGTTTCAACACCGCCCATGTCTCCCTTGGCAGGTTCATCATCTCCCAAGAGTGGAAACTTGTGGCAGAACAAAATAAACCTCACTCCACCATCATTGCAGCTACCAGGTAGCCGGTTGAAGAGTGCTTTGAGTGCTAGGGATATGGATCTTGAGATGGAACTGCTCGGTCTCGACAGTCCTCGTCGTCAACAGCAACAACagcttcaacaacaacaattgaTTGAAGAGATTGCCAGGATCTCTTCCCCATCTTTCCGGAACAACGAATTCAACAGGATTGCTGATTTGAATCCAACTAACCTTGATGACCTATTAGCATCTGCTGATCCTAATTTACTCTCTCAACTACATGGACTTTCCATGCAGCCTTCAACGCCCACACAACAGATGCAATCTCCAAGTGCTATGCAGATGCGCCAAAACATGAACATGAACATGAGCCAAAATATGAACATGAACCACCTTCGCGCAAGTTATCCATCCAATAATATGCCATCCTCTCCAGTGAGGAAACCCTCAGCATATGGATTTGATTCATCGGCTGCCGTGGCAGCTGCAGTGATGAATTCCAGGTCTTCTGCCTTCGCAAAGCAGCGCAGCCAAAGTTTCATTGACCGCGGTGCTTCAAACCACCATATCGGGCTGTCTTCGCCTTCCAACCCTTCCAGCAGGATGTCCTCTGGCCTTCCAGATTGGGGTTCCCCCACCGGAAAACTTGATTGGGGTGTAAATGGAGATGATCTGAACAAGCTGAGAAAATCTGCTTCTTTTGGGTTCAGAAATAACGCGGCAGCACCAACTCCATCCCAACATGCTGAGCCTGATGTTTCTTGGGTTAACTCATTGGTTAAGGATGTTCCCTCTGAGAATTCTGACATGTATGGCGCTGAGAATATGCGGCAGCTGAGTAGAGAGATGCTTCCACCATGGGTGGAGCAGATGTACATAGAGCAGGAGCAGATGGTAGCATGA 2049 0.4597 MCSGSKSKLSSSDYNMEGKLQKGIHNSSILLELSASDDFDAFKREVDEKGLDVNEEGFWYGRRIGSKKMESEKRTPLMIASLFGSTKVLKYIVLTGKADVNRVCGSDMVTALHCAVAGGSEFSLEVVKLLLDAGADADCLDANGNKPVDLIAPAFNTLSKSRRKVLELFLRGEVSAEVVQGEMDASFSLKKEGGDKKEYPIDISLPDINNGVYGSDDFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPKKYPYSCVPCPEFRKGSCQKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCNRKVCFFAHKPEELRPVYASTGSAMPSPKSYSASAMDMTSMSPLSLSSSSLPMSTVSTPPMSPLAGSSSPKSGNLWQNKINLTPPSLQLPGSRLKSALSARDMDLEMELLGLDSPRRQQQQQLQQQQLIEEIARISSPSFRNNEFNRIADLNPTNLDDLLASADPNLLSQLHGLSMQPSTPTQQMQSPSAMQMRQNMNMNMSQNMNMNHLRASYPSNNMPSSPVRKPSAYGFDSSAAVAAAVMNSRSSAFAKQRSQSFIDRGASNHHIGLSSPSNPSSRMSSGLPDWGSPTGKLDWGVNGDDLNKLRKSASFGFRNNAAAPTPSQHAEPDVSWVNSLVKDVPSENSDMYGAENMRQLSREMLPPWVEQMYIEQEQMVA 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03348 682 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 262 282 IPR000571 GO:0046872
Tsu05g03348 682 ProSiteProfiles Ankyrin repeat region circular profile. 107 141 - -
Tsu05g03348 682 Gene3D - 25 169 IPR036770 -
Tsu05g03348 682 ProSiteProfiles Ankyrin repeat profile. 107 142 IPR002110 GO:0005515
Tsu05g03348 682 Gene3D - 258 320 - -
Tsu05g03348 682 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 29 19 681 - -
Tsu05g03348 682 ProSiteProfiles Zinc finger C3H1-type profile. 257 284 IPR000571 GO:0046872
Tsu05g03348 682 MobiDBLite consensus disorder prediction 567 592 - -
Tsu05g03348 682 SMART c3hfinal6 292 315 IPR000571 GO:0046872
Tsu05g03348 682 SMART c3hfinal6 257 283 IPR000571 GO:0046872
Tsu05g03348 682 MobiDBLite consensus disorder prediction 346 386 - -
Tsu05g03348 682 Pfam Ankyrin repeats (3 copies) 70 138 IPR002110 GO:0005515
Tsu05g03348 682 MobiDBLite consensus disorder prediction 567 589 - -
Tsu05g03348 682 SUPERFAMILY Ankyrin repeat 24 157 IPR036770 -
Tsu05g03348 682 PANTHER UNKEMPT FAMILY MEMBER 19 681 IPR045234 -
Tsu05g03348 682 SMART ANK_2a 107 139 IPR002110 GO:0005515
Tsu05g03348 682 SMART ANK_2a 72 102 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03348 Tsu-Chr5 44803811 44806938 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03348 25 677 C2H2 Transcription Factor Family AT5G12850 39.945 1.65e-143 433
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tsu05g03348 Ank_2 1e-06 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03348 - - gmx:100783376 974.156
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g03348 05 44803811 44806938 Tsu05g03348 05 44803811 44806938 ECH