Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03338 ATGCTTTTTGAAGAACAAAAGTGCATCTCAATTAAGAGCAGAGGAGAAAACCGCACAGTTAGGCACACAGAACATTGGGAGAGCAATTCTTTGCTGATTCAAACCATGGCAGACCAAGGACATATTAAATGTGCTGAGTGTAAGCATGCGAAGAAAAAGTGTGCTAATTGTTGCATCCGCGCTTTCCTCCTGGAGGGAGAAGGAGAAGACGATTATGAGGCTATCCTTAATGTCTTCACCCTTGATAACTTTAAAAGTTGGATGGAGCATACTAGCGATGAACAGAAAGCAGAACTCGTGGAATCCATGGCCTGGGAAGCAGGGGTTAGGATGCAGTTCCCTGTCACCGGTGCATATGGTATATACAATGCACTGGCTGATGAGAATGTGATCCTTAAACAAAGGATCAATAcattgaaacaacaaaataaaatattggaaCAGAGCTTGAAATTGCTAAGTCAGGGAAAAAAGGCTTAA 480 0.4062 MLFEEQKCISIKSRGENRTVRHTEHWESNSLLIQTMADQGHIKCAECKHAKKKCANCCIRAFLLEGEGEDDYEAILNVFTLDNFKSWMEHTSDEQKAELVESMAWEAGVRMQFPVTGAYGIYNALADENVILKQRINTLKQQNKILEQSLKLLSQGKKA 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03338 159 Coils Coil 122 156 - -
Tsu05g03338 159 ProSiteProfiles LOB domain profile. 42 143 IPR004883 -
Tsu05g03338 159 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 40 151 - -
Tsu05g03338 159 PANTHER LOB DOMAIN-CONTAINING PROTEIN 5-RELATED 40 151 - -
Tsu05g03338 159 Pfam Lateral organ boundaries (LOB) domain 43 140 IPR004883 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03338 41 128 AS2 family AT1G06280 34.091 1.86e-14 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tsu05g03338 LOB 4.5e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03338 - K04572 cit:102612967 40.0466