Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03336 ATGACGGACGGTCATCTCTTCAACAATATCACCCTCGGCGGCCGCGGTGGCACTAATCCGGGGcagataaaaatattttctggGGGAATTTTATGGAAAAGACAGGGGGGTGGTAAATCAATCGAAGTTGACAAAGCTGACATAGTGAGTGTGACATGGATGAAAGTTCCAAGGAGTAATCAACTCGGAGTTCAGATCAAAGATGGTTTGTTCTACAAATTCACTGGATTTCGTGATCAGGATGTTTTAagtttgaccaatttttttcaaaacaccTTTGGAATAGCTGTAAAGGAGAAGCAGCTTTCTGTTAGTGGGCGCAATTGGGGAGAAGTTGATTTAAATGGAAATATGCTGGCTTTCATGGTTGGTTCAAAGCAAGCTTTTGAGGTTCCTTTAGCGGATGTCTCGCAAACAAACCTTCAAGGGAAAAATGATGTGATATTGGAGTTTCATGTGGATGACACAACTGGAGCCAATGAGAAAGATTCATTGATGGAGATAAGTTTCCATATACCAAATTCCAACACCCAGTTTGTTGGTGATGAAAATACCCCTCCTGCTCAGGTTTTCCGTGATAAAATAATGTCTATGGCTGATGTTGGTGCTGGAGGTGAAGATGCTGTTGTTACATTTGAGGGTATTGCAATCCTTACACCAAGGGGACGATATAGTGTCGAGTTACACCTGTCATTCTTGCGGCTTCAAGGACAGGCTAATGATTTTAAAATACAGTATAGCAGTGTGGTTCGACTATTTTTACTTCCCAAGTCTAATCAGCCACATACCTTTGTCGTTATTAGCCTTGATCCACCTATTCGGAAAGGACAAACTTTGTACCCTCATATTGTGATGCAGTTCGAAACTGATTATGTGGTTGAAAGTGAATTGGCATTAAGTGAAGATCTTTATAACTCTAAGTACAAAGACAAGTTGGAGCTGTCTTATAAGGGGCTCATCCATGAAGTGTTCACCACAATATTACGCGGGTTGTCTGGGGCCAAAGTTACCAAGCCTGGAAAATTTAGGAGTTGTCAAGATGGTTATGCCGTGAAATCATCTCTGAAAGCTGAGGATGGAATTTTGTATCCCCTTGAGAAGAGCTTCTTCTTTCTACCTAAACCTCCCACTCTTATTACACACGAAGAGATTGACTATGTGGAATTTGAGCGACATGCTGCTGGTGGTTCAAATATGCATTATTTTGACCTTCTTATCAGACTAAAATCTGATCAAGAGCATCTCTTCCGTAATATTCAAAGAAATGAGTACCACAATTTGTATGGTTTCATCAGTTCAAAGGGCttgaaaattatgaatttaGGAGATGCCCAAGGAACTGCTGGTGTTGCTAAGGTTCTTGAGAGTGATGATGATGTCGCTGTTGATCCACATCTTGCGCGCATCAGAAATGAAGCTGGTGAAGATGAAAGTGATGAGGAGGAtgaagattttgattttggtgcCGAAAAGGATGATGAAGGGTCTCCTACTGACGATTCTGGGGCAGATAATTCTGATGCTAGTCAAAGTGGTGATGAGATAGAGAAGCCTGCCAAAAAGGAGCCAAAGAAAGATCTTCCTTCTAACTCTAAGCCATCTTCTTCTAAGAAGAAATCAAAAGATGCTGATGAAGATGGAAAGAAGAGAAAAccgaagaagaaaaaggatcCAAATGCACCCAAGAGGGCATTGTCTGGATTCATGTTCTTTTCTCAAATGGAAAGAGAGAATATAAAGAAAACTACTCCTGGGATTTCATTTACGGATGTTGGAAGAGTACTTGGAGAGAAATGGAAAAAGATGTCAGCTGAGGAGAAGGAGCCATATGAGGCCAAAGCTCGTGTTGATAAAATACGTTACAAGGATGAGATTAGTGGCTACAAGAGTCAACAAGCACAAGCACAAGCACAACCACAACCGATGAATATAGATTCAGGAAATGAATCTGACAGTGCCTAA 1962 0.394 MTDGHLFNNITLGGRGGTNPGQIKIFSGGILWKRQGGGKSIEVDKADIVSVTWMKVPRSNQLGVQIKDGLFYKFTGFRDQDVLSLTNFFQNTFGIAVKEKQLSVSGRNWGEVDLNGNMLAFMVGSKQAFEVPLADVSQTNLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFVGDENTPPAQVFRDKIMSMADVGAGGEDAVVTFEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVVISLDPPIRKGQTLYPHIVMQFETDYVVESELALSEDLYNSKYKDKLELSYKGLIHEVFTTILRGLSGAKVTKPGKFRSCQDGYAVKSSLKAEDGILYPLEKSFFFLPKPPTLITHEEIDYVEFERHAAGGSNMHYFDLLIRLKSDQEHLFRNIQRNEYHNLYGFISSKGLKIMNLGDAQGTAGVAKVLESDDDVAVDPHLARIRNEAGEDESDEEDEDFDFGAEKDDEGSPTDDSGADNSDASQSGDEIEKPAKKEPKKDLPSNSKPSSSKKKSKDADEDGKKRKPKKKKDPNAPKRALSGFMFFSQMERENIKKTTPGISFTDVGRVLGEKWKKMSAEEKEPYEAKARVDKIRYKDEISGYKSQQAQAQAQPQPMNIDSGNESDSA 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03336 653 MobiDBLite consensus disorder prediction 469 568 - -
Tsu05g03336 653 SUPERFAMILY PH domain-like 206 440 - -
Tsu05g03336 653 SMART Rtt106_2 348 441 IPR013719 -
Tsu05g03336 653 MobiDBLite consensus disorder prediction 627 653 - -
Tsu05g03336 653 PANTHER FACT COMPLEX SUBUNIT SSRP1 1 650 - -
Tsu05g03336 653 Gene3D - 1 93 IPR011993 -
Tsu05g03336 653 Gene3D High mobility group box domain 544 642 IPR036910 -
Tsu05g03336 653 CDD HMGB-UBF_HMG-box 563 626 - -
Tsu05g03336 653 MobiDBLite consensus disorder prediction 475 490 - -
Tsu05g03336 653 Pfam HMG (high mobility group) box 561 629 IPR009071 -
Tsu05g03336 653 Pfam Histone chaperone Rttp106-like 350 439 IPR013719 -
Tsu05g03336 653 Pfam Structure-specific recognition protein (SSRP1) 106 174 IPR024954 -
Tsu05g03336 653 Gene3D - 339 448 IPR011993 -
Tsu05g03336 653 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 561 629 IPR009071 -
Tsu05g03336 653 SUPERFAMILY HMG-box 548 631 IPR036910 -
Tsu05g03336 653 PANTHER FACT COMPLEX SUBUNIT SSRP1-B 1 650 - -
Tsu05g03336 653 MobiDBLite consensus disorder prediction 510 552 - -
Tsu05g03336 653 PRINTS Structure-specific recognition protein signature 400 416 IPR000969 GO:0003677|GO:0005634
Tsu05g03336 653 PRINTS Structure-specific recognition protein signature 356 374 IPR000969 GO:0003677|GO:0005634
Tsu05g03336 653 PRINTS Structure-specific recognition protein signature 374 391 IPR000969 GO:0003677|GO:0005634
Tsu05g03336 653 PRINTS Structure-specific recognition protein signature 416 434 IPR000969 GO:0003677|GO:0005634
Tsu05g03336 653 PRINTS Structure-specific recognition protein signature 329 342 IPR000969 GO:0003677|GO:0005634
Tsu05g03336 653 PRINTS Structure-specific recognition protein signature 241 257 IPR000969 GO:0003677|GO:0005634
Tsu05g03336 653 PRINTS Structure-specific recognition protein signature 264 280 IPR000969 GO:0003677|GO:0005634
Tsu05g03336 653 PRINTS Structure-specific recognition protein signature 219 235 IPR000969 GO:0003677|GO:0005634
Tsu05g03336 653 SMART hmgende2 560 630 IPR009071 -
Tsu05g03336 653 Gene3D - 199 338 - -
Tsu05g03336 653 CDD PH2_SSRP1-like 342 441 - -
Tsu05g03336 653 Gene3D - 95 179 IPR038167 -
Tsu05g03336 653 Pfam POB3-like N-terminal PH domain 7 98 IPR035417 -
Tsu05g03336 653 CDD PH1_SSRP1-like 207 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03336 Tsu-Chr5 44666648 44672469 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03336 557 636 ARID Transcription Factor Family AT1G04880 36.250 1.11e-08 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Tsu05g03336 POB3_N 4.6e-23 CL0266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03336 K09272 - gmx:100805034 1109.36