Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03328 ATGAGGACATACATCATGTTTCTTCTCTATTTTACTACGTTGTCAACAACAGTTGCTCTTGCTTTGAGTTTGAGTTCAATGACTGATAAACGAGCTTTGCTTTCTTTGAAAGTAAAGCTTACCAATGGTGAACCTGAGTCTCTTCCATCATGGAATGAATCTCTTCATTTCTGTGAATGGGAGGGTGTTACATGCGGTCGACGCCATATGAGAGTCACTATCTTGCATTTGGAAAATCAAAATTGGGGTGGTACTCTTGAACCAGCCTTGGGAAATCTAACATTTCTCAGAAAACTCAAATTTTCCAACATCAATTTGCATGGAGAAATTCCGAGAGAAGTTGGTCGTTTGAAAAGGTTGCAAGTTCTTGACTTGAGCAAGAATAAATTTCAAGGTAAGATTCCTATTGAACTAAGCAATTGTACTAATCTTAAGGAAATTATCTTGTTGTACAATCAACTTACTGGAAATGTTCCTTCATGGTTTGATTCCATGACACAACTTAATAAGTTGCTTCTTGGAGCAAATAACCTTGTGGGTACTATTCCACCTTCTCTAGGAAATATTTCATCACTCCAAAATATAACATTAGCACGAAATCAATTACATGGAAGCATACCTCATGTCTTAGGCAGGTTATCAAATTTGAAAGAGCTAAATTTGGgttcaaataatttttctagTGAAATTCCTCATTCTCTTTACAATCTATCAAATATTCAAGTATTTGTCCTTGGACAAAACCAATTGTTTGGCACTCTTCCATTAAATATGCATCTTGCTTTTCCTAATCTTAAAGCATTTTTGGTAGGAGAGAACCACATAAGCGGAACTTTCCCGTTTTCAATATCAAATCTCACTGAATTGCGATGGTTCGATATATCCATAAATGATTTTCATGGGCCAATACCTCCAACTTTGGGGCGCTTAAAAAAACTTAGGAGGTTTGACATCAGTTATAATGGTTTTGGGAATGGAAGGGATCGTGATTTGGATTTCATTTCTTCGTTAACCAATTGTACTCAATTGCAAATACTTATTTTGCATTATAATAGATTTGGTGGTGCAATGACAAATCTTATAGGCAACTTCTCTACCCATCTCAATTGGCTAAGTATGGCAGGTAATCAAATATATGGCGGAATGCCTGAAAGAATTGGACAACTAATTGGTTTAACTCGCTTTGATATGATGGAGAATTTCTTAGAGGGAACAATTCCAGATTCAATTGGAAGGCTTACAAATCTAGTAAGATTGGTTTTGCAAGAAAACAAATTATCCGGCAAAATTCCTATTGTTATTGGCAATCTTACTAACTTATCTGAGTTTTATCTGCATACTAATAAATTAGAAGGAAGCATTCCATCGACTCTGAGATATTGCACCAAGTTGCAATCATTTGGTGCATCTGACAACAACTTGAGTGGTGATATACCTGACCAAACATTTGGCTATATTGAAGATTTGATAAATCTTGACTTGTCTAACAATTCATTGATCGGTCCCCTTCCTTATGAGTTTGGTAACTTGAAGCATCTTTCGATATTGTATCTGCATGAAAACAAGTTGTCGGGTGAAATTCCATCTGAACTTGGAGCTTGTATGGCATTAAGAGAGCTTGTTTTGGGAGGAAACTTCTTTCAAGGAAGTATACCTTTGTTTTTGGCCTCCTCTTTAAGGTCCCTCGAAATCTTAGACCTTTCTAGCAATAACTTTACAAGTGTAATCCCTCGTGAACTAGAGAATCTACCATCGTTGAATTctttaaatttgtcttttaacaATCTCTATGGTGAGGTTCCCGTAAGAGGTGTCTTTGGCAATGTCAGTGCAATTTCACTTATTGGAAACAGTGATCTTTGTGGGGGTATACCTCAATTAAAGTTGCCTACATGTTCTAGGTTACTCCCAAAGAAACATACAAGATTACCTAAAAAGAAATTTGTCCCCATCATTGTTATTGGCGGGATTTTCATCTCTGTAATAGCTTTTATCGGTATCTATTTTCTCGGAAAGAAAACCAAAAAGTCATTTTCTTTAGCATCTCTACAGAATGGACACATGGAGGTTACTTATCAAGATTTACATGAAGCAACCAACGGATTTTCTTTATCCAATTTGGTAGGAGCCGGAAGTTTTGGTTCTGTATACAAAGGATCTCTTCTTAAATTTAAAGGAACTATTGTAGTAAAGGTTTTGAAGCTTGAAACACGTGGGGCATTGAAGAGTTTCGTGGCTGAATGCAAAGTACTGGAAAAGATGAAACACAAAAATCTTCTCAAGCTCTTAACCTTTTGTTCAAGTGTTGATTATAACGGTGAGGTTTTCAAGGCTATAGTTTTTGAGTTCATGCCTATGGGGAACCTAGAAAACTTGTTGCACAACAATGAACATCTCGAGTCAAGAAACTTAAATATCAACCTTAGACAAAGGTTAAGTATTGCTCTCGATGTAGCACAAGCATTGGATTATCTTCACCATAATTCCCATCAAGTTGTAGTTCACTGTGATATTAAACCAAGCAATGTTCTTCTGGACGATGACATTGTTGCTTACTTGGGAGATTTTGGGTTAGCAAGGTTCCTTCATGGGGCTACAGCGAGTTCCAGTAAAGACCAAGTTAGTTCTTCCGCGATTCAAGGAACCATTGGATATGTTCCCCCAGAATATGGAGTTGGTGGAAAAGTATCACCACAAGGTGATATCTACAGCTATGGAATTCTATTGTTGGAGATGTTAACAGCAAAAAGACCAACAGACAACATGTTTGGTGAAGGTCTAAGCTTACATAAATTATGTAAGACAGCAATCCCACAAAAGATCACTGAGATAGCAGATTCACAGTTGCTTATCCCATTTTCTGAAGAACAGATAGGAATCATGGAAGATCAGAGGGAGATTCTACTGTCCTTTGCTAGGATTGGAGTTGCATGTTCCGCAGAATACCCCGCTCAACGAATGAGCATAAAAGATGTTATAACGGAGTTGCATGCAATTAAACAAAAGTTGTCCCTCTAG 3018 0.3675 MRTYIMFLLYFTTLSTTVALALSLSSMTDKRALLSLKVKLTNGEPESLPSWNESLHFCEWEGVTCGRRHMRVTILHLENQNWGGTLEPALGNLTFLRKLKFSNINLHGEIPREVGRLKRLQVLDLSKNKFQGKIPIELSNCTNLKEIILLYNQLTGNVPSWFDSMTQLNKLLLGANNLVGTIPPSLGNISSLQNITLARNQLHGSIPHVLGRLSNLKELNLGSNNFSSEIPHSLYNLSNIQVFVLGQNQLFGTLPLNMHLAFPNLKAFLVGENHISGTFPFSISNLTELRWFDISINDFHGPIPPTLGRLKKLRRFDISYNGFGNGRDRDLDFISSLTNCTQLQILILHYNRFGGAMTNLIGNFSTHLNWLSMAGNQIYGGMPERIGQLIGLTRFDMMENFLEGTIPDSIGRLTNLVRLVLQENKLSGKIPIVIGNLTNLSEFYLHTNKLEGSIPSTLRYCTKLQSFGASDNNLSGDIPDQTFGYIEDLINLDLSNNSLIGPLPYEFGNLKHLSILYLHENKLSGEIPSELGACMALRELVLGGNFFQGSIPLFLASSLRSLEILDLSSNNFTSVIPRELENLPSLNSLNLSFNNLYGEVPVRGVFGNVSAISLIGNSDLCGGIPQLKLPTCSRLLPKKHTRLPKKKFVPIIVIGGIFISVIAFIGIYFLGKKTKKSFSLASLQNGHMEVTYQDLHEATNGFSLSNLVGAGSFGSVYKGSLLKFKGTIVVKVLKLETRGALKSFVAECKVLEKMKHKNLLKLLTFCSSVDYNGEVFKAIVFEFMPMGNLENLLHNNEHLESRNLNINLRQRLSIALDVAQALDYLHHNSHQVVVHCDIKPSNVLLDDDIVAYLGDFGLARFLHGATASSSKDQVSSSAIQGTIGYVPPEYGVGGKVSPQGDIYSYGILLLEMLTAKRPTDNMFGEGLSLHKLCKTAIPQKITEIADSQLLIPFSEEQIGIMEDQREILLSFARIGVACSAEYPAQRMSIKDVITELHAIKQKLSL 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03328 1005 ProSitePatterns Serine/Threonine protein kinases active-site signature. 833 845 IPR008271 GO:0004672|GO:0006468
Tsu05g03328 1005 SMART serkin_6 702 1004 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g03328 1005 Pfam Leucine rich repeat N-terminal domain 28 65 IPR013210 -
Tsu05g03328 1005 SUPERFAMILY RNI-like 274 602 - -
Tsu05g03328 1005 ProSiteProfiles Protein kinase domain profile. 702 1000 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g03328 1005 SUPERFAMILY L domain-like 53 357 - -
Tsu05g03328 1005 Gene3D Ribonuclease Inhibitor 331 634 IPR032675 -
Tsu05g03328 1005 Gene3D Ribonuclease Inhibitor 165 330 IPR032675 -
Tsu05g03328 1005 Pfam Protein kinase domain 705 990 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g03328 1005 Pfam Leucine rich repeat 537 596 IPR001611 GO:0005515
Tsu05g03328 1005 Pfam Leucine rich repeat 191 250 IPR001611 GO:0005515
Tsu05g03328 1005 SUPERFAMILY Protein kinase-like (PK-like) 677 996 IPR011009 -
Tsu05g03328 1005 Gene3D Phosphorylase Kinase; domain 1 668 783 - -
Tsu05g03328 1005 ProSiteProfiles Leucine-rich repeat profile. 561 584 IPR001611 GO:0005515
Tsu05g03328 1005 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 27 1004 - -
Tsu05g03328 1005 Gene3D Transferase(Phosphotransferase) domain 1 784 1004 - -
Tsu05g03328 1005 Coils Coil 789 809 - -
Tsu05g03328 1005 Gene3D Ribonuclease Inhibitor 28 143 IPR032675 -
Tsu05g03328 1005 SMART LRR_typ_2 583 608 IPR003591 -
Tsu05g03328 1005 SMART LRR_typ_2 165 189 IPR003591 -
Tsu05g03328 1005 SMART LRR_typ_2 559 582 IPR003591 -
Tsu05g03328 1005 SMART LRR_typ_2 117 141 IPR003591 -
Tsu05g03328 1005 SMART LRR_typ_2 510 534 IPR003591 -
Tsu05g03328 1005 SMART LRR_typ_2 437 461 IPR003591 -
Tsu05g03328 1005 SMART LRR_typ_2 213 237 IPR003591 -
Tsu05g03328 1005 PANTHER LRR RECEPTOR-LIKE KINASE 27 1004 - -
Tsu05g03328 1005 ProSitePatterns Protein kinases ATP-binding region signature. 708 731 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03328 Tsu-Chr5 44591057 44594191 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03328 28 1002 Receptor kinase-like Gene Family AT3G47570 42.467 0.0 753
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Tsu05g03328 Pkinase 1.6e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03328 - - gmx:100777490 1277.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g03328 05 44591057 44594191 Tsu05g03328 05 44591057 44594191 ECH