Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03325 CAATATCTCAGCAATTTCACTAAGCGGAAATAAGAATCTTTGTGGAGGAATACCTCAATTAAAGCTTCCTATATGCTTTAAGGATCCCTCTAAGAAACACAAAAGATCTCTCAAAAAGAAGCTTATTCTCGTCGGTGTAATTGGTGGGGTTTTGATCTCTTTCATAGCTTTTATAATTGTTCATTTCCTTACCAGAAAGCCCAAAAGGTTACCTACTTCACCATCTTTGCGAAATGGAAACGTGAGGGTTACTTATGGTGAACTACATGATGCAACCAATGGATTTTCTGCATCTAACTTGGTAGGAACGGGAAGCTTTGGATCTGTTTACAAAGGATCACTTCTTCAGTTTGAAAGACCTGTTGTTGTAAAGGTGTTGAATCTTCAAACACGTGGAGCAGCAAAGAGTTTCGTGGCAGAATGCAAAGCTCTAGCAAATATGAAGCACCGGAATCTTGTCAAGATCCTAACTTGTTGTTCAAGTGTTGATTATAATGGTGACGACTTCAAGGCTATAGTTTTCGAGTTCATGCCTAATGGAAATATTTCTCTTGATGTAGCTCATGCACTTGATTATCTTCACAATGATACGGAGCAAGTCGTAGTTCACTGTGATATTAAGCCAAGCAATGTTCTTCTTGATGATGACATTGTAGCCCACTTGGGAGACTTTGGCTTAGCTAGGCTCATTCATGGAGCCACAGGACATTCAAATAATGATCAAGTTATTTCCTCCACACTTAAGGGAACTATAGGATATGTTCCTCCTGAGTATGGAGCAGGTGGTCAAGTATCATCACAAGGAGATATCTACAGCTATGGAATTCTTCTTTTAGAAATGCTCACTGGAAAGAGACCAACAAATAACATGTTTAATGCGAATCTAAGCCTCCACCAGTTTTGTAAGATGAATGTTCCAGAAGGAATCCTTGAGATAGTAGATTCGCATTTGCTTATGCCATTTGTTGAAGATCAAGCAGAGATTGTggaaaacaatattaaaaaatgtttggTGATGTTTGCTGGAATTGGAGTTGCATGTTCAGAAGAGTTTCCTGCTCATCGAATGTTGATAAAAGATGTTATAGTTAAGCTaaatgaaatcaaatcaaagTTTCCATGCTAG 1126 0.373 NISAISLSGNKNLCGGIPQLKLPICFKDPSKKHKRSLKKKLILVGVIGGVLISFIAFIIVHFLTRKPKRLPTSPSLRNGNVRVTYGELHDATNGFSASNLVGTGSFGSVYKGSLLQFERPVVVKVLNLQTRGAAKSFVAECKALANMKHRNLVKILTCCSSVDYNGDDFKAIVFEFMPNGNISLDVAHALDYLHNDTEQVVVHCDIKPSNVLLDDDIVAHLGDFGLARLIHGATGHSNNDQVISSTLKGTIGYVPPEYGAGGQVSSQGDIYSYGILLLEMLTGKRPTNNMFNANLSLHQFCKMNVPEGILEIVDSHLLMPFVEDQAEIVENNIKKCLVMFAGIGVACSEEFPAHRMLIKDVIVKLNEIKSKFPC 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03325 374 ProSitePatterns Protein kinases ATP-binding region signature. 101 124 IPR017441 GO:0005524
Tsu05g03325 374 SUPERFAMILY Protein kinase-like (PK-like) 69 361 IPR011009 -
Tsu05g03325 374 ProSiteProfiles Protein kinase domain profile. 95 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g03325 374 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 181 374 - -
Tsu05g03325 374 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 1 181 - -
Tsu05g03325 374 SMART serkin_6 95 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g03325 374 Pfam Protein kinase domain 98 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g03325 374 PANTHER LRR RECEPTOR-LIKE KINASE 1 181 - -
Tsu05g03325 374 Gene3D Transferase(Phosphotransferase) domain 1 176 372 - -
Tsu05g03325 374 Gene3D Phosphorylase Kinase; domain 1 61 175 - -
Tsu05g03325 374 PANTHER LRR RECEPTOR-LIKE KINASE 181 374 - -
Tsu05g03325 374 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03325 Tsu-Chr5 44560166 44579726 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03325 1 372 Receptor kinase-like Gene Family AT3G47570 45.209 3.66e-109 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Tsu05g03325 Pkinase 1.7e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03325 - - mtr:MTR_1g029940 569.311