Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03322 ATGATAAAGCTTACTAAATTGCTTCTTGGTCACAATAATCTAGTTGGCACTATTCCATCTTCCATTGGAAATATTTCATCACTGCAATATTTAAGATTTCCATTTCGTAACTTGGAAGGAAGCATACCTTATTCTTTGGGTAGGTTGTCAAATTTGAAAGTACTAAATCTAGATTCAAATAATTTGTCAGGTAATATCCCTCAATCTCTTTACAACCTATCAAATATTCAAGTGTTTGATATTGGAGGAAACAAGTTATTTGGTAGTCTTCCATCAAATATGCATCTTTCTTTTCCAAATCTTGAAAAATTCTATGTTGGAATGAACAATATAAGCGGAACTTTTCCGTCATCAATAACCAACCTCACTGAATTGCAAGATTTTGAGATAGGTGTGAATGATTTTAATGGTCCTATACCTTTAACTTTGGGTCGATTAAATAAACTTGAGTGGTTTAATATTGGTGGTGAATTGCCATATCTTATAGGAAACTTTTCCATTCATCTAAGTTATCTTAGTATAAATGATAATCAAATATATGGAGTGATACCTGATAGAATTGGACAGCTAATCGGTTTAACTTACTTAAACCTTGGAAACAATTCCCTTGAGGGAACAATTCCAGATTCAATTGGGAACCTTAGCAATCTAGGAAGCTTGGATTTGGAATTAAACAAATTCAATGGTATCATTCCTACTAGTATTGGAAACCTTACTAATATGTTTGAACTATATCTATCTGCCAATAACTTGGAAGGAAGCATTCCATTTACCATAAAAAAGTGCACACAATTGCAGACACTAAGTATTTCTTATAACAAATTGAGTGGTGATATACCAAATCAAACATTTAGCAATCTAGAAGGTTTAATAAGTCTTTATTTGACATACAACTCTTTGACTGGTGCCATTCCTTCAGAATTTGGCAACTTGAAGCATCTTTCAGAATTGGATCTAAGCTCAAACAAATTGTCCGGTGAAATTCCAAATGAACTTGGCACTTGTGTGGACTTAACAATGCTCTGGTTGGGGAGTAACTTCTTCCATGGAAGTATACCTTTATTTTTGGGTTCCTCTATAAGGTCCCTCATAATATTAGACCTTTCTAGCAATAATTTCTCGAGCATAATCCCTCGTGAATTAGAAAATATGACATCATTGACTACTTTAAACTTGTCTTTTAACAATCTTTATGGTGAAGTTCCTATATCAGGTGTCTTTAGTAATATCACAGCAATTTCACTGATTGGAAACAAGAATCTTTGTGGGGGAATACCTCAATTGAAGTTGCGTGCTTGCTCTAAGTTTCTGTCAAAGAAACATAAGATatcttcaaaaaagaaatttattatcATCGGTGTAATTGGTGGAATTTTGATCTCTTTCATAGctcttataatttttcattttctcatgAGAAAGCCGAAAAGGTTACCTTCTTCACCATCTTTGCAAAAAGAGAACTTGAGGGTTACTTATGGCGAGCTACATGAAGCAACCAAAGGATTTTCTGCATCTAACTTGGTAGGAACAGGAAGCTTTGGATCTGTTTACAAAGGATCACTTCTCCACTTTGAAAGACCTATTGTTGTAAAGGTGTTGAATCTTGAAACACGCGGGGCAGCAAAGAGTTTCATGGCAGAATGCAAAGCTCTAGGAAAGATGAAGCACCGGAATCTTATAAAGATACTAACTTGCTGTTCAAGTGTTGATTATAATGGTGATGATTTCAAGGCTATTGTGTTTGAGTTCATGCCTAATGGAAGTCTAGAAAACTTGTTGCATGATATCGAAGGGTCTGGTAATCATAATCTCAGCTTCACACAAAGGGTAGACATTGTTCTTGATGTAGCTCATGCACTTGATTATCTTCATAATGAAACAGAGCAAACTGTGGTTCACTGCGATGTTAAGCCAAGCAATGTTCTTCTTGATGATGACATTGTAGCCCACTTGGGAGACTTTGGCTTAGCTAGGCTCATTCATGGAGCCACAGGACATTCAAATAAAGATCAAGTTAGTTCCTCCACAATTAAGGGAACTATAGGATATGTTCCTCCTGAGTACGGAGCAGGTGGTCCAGTAACACCGGAAGGAGATATCTACAGCTATGGGATTCTGCTGTTGGAAATGCTCACTAGAAAGAGGCCAACAAATAACATGTTTTACGAGAATCTAAATCTACATAAATTCTGTAAGATGAAAATTTCAGAAGGAATTCTTGAAATAGTGGATTCATGTTTGCTTATTCCATTCGCCGAAGATCAGACACAAGTTGCGGAAAACAatattaaacaatgtttaataatGTTTGCTGAAATAGGAGTTGCATGTTCTGAAGAATTTCCTTCTAAAAGAATGCTCGTAAAAGATGTTATAGTGAAGTTGCTTGCAATTAAACAGAAGTTGTCTTGCTAA 2418 0.3482 MIKLTKLLLGHNNLVGTIPSSIGNISSLQYLRFPFRNLEGSIPYSLGRLSNLKVLNLDSNNLSGNIPQSLYNLSNIQVFDIGGNKLFGSLPSNMHLSFPNLEKFYVGMNNISGTFPSSITNLTELQDFEIGVNDFNGPIPLTLGRLNKLEWFNIGGELPYLIGNFSIHLSYLSINDNQIYGVIPDRIGQLIGLTYLNLGNNSLEGTIPDSIGNLSNLGSLDLELNKFNGIIPTSIGNLTNMFELYLSANNLEGSIPFTIKKCTQLQTLSISYNKLSGDIPNQTFSNLEGLISLYLTYNSLTGAIPSEFGNLKHLSELDLSSNKLSGEIPNELGTCVDLTMLWLGSNFFHGSIPLFLGSSIRSLIILDLSSNNFSSIIPRELENMTSLTTLNLSFNNLYGEVPISGVFSNITAISLIGNKNLCGGIPQLKLRACSKFLSKKHKISSKKKFIIIGVIGGILISFIALIIFHFLMRKPKRLPSSPSLQKENLRVTYGELHEATKGFSASNLVGTGSFGSVYKGSLLHFERPIVVKVLNLETRGAAKSFMAECKALGKMKHRNLIKILTCCSSVDYNGDDFKAIVFEFMPNGSLENLLHDIEGSGNHNLSFTQRVDIVLDVAHALDYLHNETEQTVVHCDVKPSNVLLDDDIVAHLGDFGLARLIHGATGHSNKDQVSSSTIKGTIGYVPPEYGAGGPVTPEGDIYSYGILLLEMLTRKRPTNNMFYENLNLHKFCKMKISEGILEIVDSCLLIPFAEDQTQVAENNIKQCLIMFAEIGVACSEEFPSKRMLVKDVIVKLLAIKQKLSC 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03322 805 ProSitePatterns Protein kinases ATP-binding region signature. 509 532 IPR017441 GO:0005524
Tsu05g03322 805 PRINTS Leucine-rich repeat signature 314 327 - -
Tsu05g03322 805 PRINTS Leucine-rich repeat signature 384 397 - -
Tsu05g03322 805 SUPERFAMILY L domain-like 166 423 - -
Tsu05g03322 805 SMART LRR_typ_2 311 335 IPR003591 -
Tsu05g03322 805 SMART LRR_typ_2 384 409 IPR003591 -
Tsu05g03322 805 SMART LRR_typ_2 360 383 IPR003591 -
Tsu05g03322 805 SMART LRR_typ_2 287 310 IPR003591 -
Tsu05g03322 805 SMART LRR_typ_2 49 73 IPR003591 -
Tsu05g03322 805 SMART LRR_typ_2 1 25 IPR003591 -
Tsu05g03322 805 SMART LRR_typ_2 190 214 IPR003591 -
Tsu05g03322 805 SMART LRR_typ_2 262 286 IPR003591 -
Tsu05g03322 805 PANTHER LRR RECEPTOR-LIKE KINASE 153 805 - -
Tsu05g03322 805 ProSitePatterns Serine/Threonine protein kinases active-site signature. 632 644 IPR008271 GO:0004672|GO:0006468
Tsu05g03322 805 Gene3D Phosphorylase Kinase; domain 1 469 584 - -
Tsu05g03322 805 ProSiteProfiles Protein kinase domain profile. 503 771 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g03322 805 SUPERFAMILY Protein kinase-like (PK-like) 479 797 IPR011009 -
Tsu05g03322 805 SMART serkin_6 503 753 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g03322 805 Pfam Leucine rich repeat 192 251 IPR001611 GO:0005515
Tsu05g03322 805 Pfam Leucine rich repeat 264 324 IPR001611 GO:0005515
Tsu05g03322 805 Pfam Leucine Rich Repeat 51 73 IPR001611 GO:0005515
Tsu05g03322 805 Pfam Leucine Rich Repeat 362 383 IPR001611 GO:0005515
Tsu05g03322 805 PANTHER LRR RECEPTOR-LIKE KINASE 1 156 - -
Tsu05g03322 805 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 1 156 - -
Tsu05g03322 805 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 153 805 - -
Tsu05g03322 805 Gene3D Ribonuclease Inhibitor 157 441 IPR032675 -
Tsu05g03322 805 Gene3D Transferase(Phosphotransferase) domain 1 585 804 - -
Tsu05g03322 805 SUPERFAMILY L domain-like 3 209 - -
Tsu05g03322 805 Gene3D Ribonuclease Inhibitor 1 156 IPR032675 -
Tsu05g03322 805 Pfam Protein kinase domain 506 768 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03322 Tsu-Chr5 44541617 44544487 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03322 1 802 Receptor kinase-like Gene Family AT3G47570 40.566 0.0 589
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Tsu05g03322 Pkinase 1.5e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03322 - - mtr:MTR_1g029940 1078.93