Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03321 ATGAGAACTTGTATGATGTCTCTTCTCTGCTTTGCTGCTAGCCAAGTTCTAGTCTATTACATGCCGTCAGTAACATTTGCTCTTTCTTTGAGCTCAGAGACTGATAAGCTTGCTTTACTTGCTTTGAAAGAAAAACTTACAAATGGTGTACAAGATTCTCTACCATCATGGAATGAGTCTTTACATTTCTGTGAATGGCCGGGGGTTACATGTGGTCATCGCCATATGAGAGTCACCGTCTTGCATTTGGAGAATCAAACTTGGGGTGGAACTCTTGGACCATCTTTGGGAAATTTAACCTTTCTCAAAGTACTTACTCTTTCAAACGTCGGTTTGCATGGTAAAATTCCAGAACAAGTTGGTCGTTTAAAGCGACTGCAAATTCTTGACTTAAGAAAGAACAATCTTGAAGGAGAGATTCCTATAGAGCTCACTAACTGCACAAATATCAAGAAAATTTATTTGCCATACAATCAACTCACCGGGAGAGTTCCGACATGGTTGGGATCAATGATGCAACTTACTACCTTATTTCTTGGTAGAAATAATCTAGTTGGTAGTATTCCGTCTTCTCTGGGAAATATTTCATCACTCCAAAATCTATCACTTGTGGATAATTGCTTGAAAGGAAGCATACCATATTCTTTGGGTAGATTATCATGTTTGAAACTACTGAATCTAGGTTCAAATAATTTGTCAGGTGAAATCCCTCATTCTCTTTACAATctatcaaatattcaaaaagtttCTCTTGTGCAAAATGAGTTATCTGGTAGTCTTCCATCAAACATGAATTTTGCTTTTCCCGatcttcaacttttttttataggaacaaATCAAATAACCGGAACATTTCCGTCGTCCATATCCAACCTCACAAATTTGAAAGAGTTTGATTTATCATGGAATGCTTTCAATGGACCAATACCTCTTACTTTGGGTCAATTAAATAAACTCGAGTACTTTCATATTGGTGGTAATCATTTTGGGAGTGGAGGAGCTCATGATTTAGAGTTCCTTTCCTCGCTAACCAACTGTACTCGATTGTCAATCCTCTATTTTGGAACAAATAACTTTAGTGGCGAGTTGCCAGATCTTATAGGAAACTTTTCCACCCAACTTAGTTTTCTTAATATGggttttaatcaaatatatggGGTGATACCTGAAACAATTGGACAATTGGTCGGTTTAGCTTACTTAAACATCGGAAACAATTCCCTCGAGGGAACAATTCCATGTTCAATTGGAAAGCTTAATAATTTAGTAAGATTGGTCTTAGAAGAAAACAAACTAGTTGGAAATATTTCTACTTTTATTAGCAATCTTACTATATTGTCTGAACTTTATTTGTCTGGAAATAATTTGGAAGGATGCATTCCATCTAACATCAGATATTGCATCAAGTTGCAAATACTGAGTATTTCTTATAACAAATTGAGTGGTGTTATCCCAAATCAAACATTTATCTATCTAGAAGATTTAATAGATATTTACTTAGAAAACAACTCTTTGACTGGTCCCATTCCTTTGGAGTTTGGTAACATGAAGCATATTTCAATATTGTAtctaaactcaaataagttgtCTGGTGAAATTCCAAAGGATCTTGCTTCTTGTTATACATTAGTAGAGCTTAAATTGGAGGGAAATAATTTCCATGGAGGTATACCTTCCTTCTTGGGCTCTTTAAGATCCTTGGAACTATTGGACATTTCTAACAATAACTTATCTGGAACAATCCCCCTTGAGCTAGAAAATTTGACATTGTTGAATAATTTGAActtgtcttttaatcacttgtATGGTGAGGTTCCCATTGGAGGTGTCTTTAGCAATATCTCATCAATTTCGCTGACCGGAAACAAGAATCTTTGTGGTGGAATACCTCAATTGAAGCTTCCTGCATGTGTAAGAGTGTCATCCAAGAAACATAAAAGATCTCTAAAAAGTAAACTTATTCCCATCAGTGTAATCAGTGGGGTTTTGATCTCTTTCATAGCTTTTATAGTTGTCCATTTTTTCACAAGAAATTTCAAAAGGTTACCTTCTGTTTCATCATTCCAAAATGGGAACTCAAGGGTTACTTATGGAGAGCTACATGTAGCAACCAACGGGTTTTCTCCGTCCAATTTGATTGGAGCAGGAAGCTTTGGCTCCGTTTACAAAGGATCTCTCCCCAACTTTGAAAGATCTATTGCTGTAAAGGTGCTGAATCTTGAAACACGCGGAGCAACAAAGAGTTTCATGGCGGAATGCAAAACTTTGGGAAAGATGAAACATAGGAATCTTGTCAAGATCCTTACTTGTTGTTCAAGTGTTGATTATAAGGGTGAAGATTTCAAGGCTATTGTTTTTGAGTTCATGCCTAATGGGAGTTTAGAAAAGTTGTTGCACGATAATGAAGGGTCTGATAATCACATTCTACACCTCCAACAAAGCGTAGACATTGCTCTTGATGTAGCTCATGCATTGGATTATCTTCACAATGATACAGAACAAGTTGTAGTTCATTGTGATATTAAGCCGAGCAACGTACTTCTTGACAAAGACCTTCTTGCCCATTTGGGAGACTTTGGCTTAGCTAGGCTCATTCACGGAGCCACGGAACATTCAAGTAAAGACCAATTTAGTTCCTCTGCTATTAAGGGAACTCTCGGATATGTTCCACCTGAGTATGGAGCAGGTAGTCAAGTATCACCTCAAGGAGATATCTATAGCTATGGGATTCTAATATTAGAAATGCTCACCGGAAAGAGACCAACTGATAACATGTTTTCGGAGAGTCTAACTCTACTTGAATTATGTAAGAAGAAAATTCCAGAAGGAATCCTTGAAATAGTAAATTCACAATTGCTTTTGCCGTTTGGTGAAGACCGGACAGGGATTGTGGGAAACCAGATTAGGATGTGTTTGGTGAAGTTTGCTAGAATTGGAGTTGCATGTTCTGAAGAGTTTCCTACTCATCGAATGCCAATAAAAGATGTTATAGTTAAGTTGAATGAAATTAAATCAAAGTTGCCATGTTTTGAAGAGAATAATTGTGTTCACAGGAAAGCTTGA 3063 0.3588 MRTCMMSLLCFAASQVLVYYMPSVTFALSLSSETDKLALLALKEKLTNGVQDSLPSWNESLHFCEWPGVTCGHRHMRVTVLHLENQTWGGTLGPSLGNLTFLKVLTLSNVGLHGKIPEQVGRLKRLQILDLRKNNLEGEIPIELTNCTNIKKIYLPYNQLTGRVPTWLGSMMQLTTLFLGRNNLVGSIPSSLGNISSLQNLSLVDNCLKGSIPYSLGRLSCLKLLNLGSNNLSGEIPHSLYNLSNIQKVSLVQNELSGSLPSNMNFAFPDLQLFFIGTNQITGTFPSSISNLTNLKEFDLSWNAFNGPIPLTLGQLNKLEYFHIGGNHFGSGGAHDLEFLSSLTNCTRLSILYFGTNNFSGELPDLIGNFSTQLSFLNMGFNQIYGVIPETIGQLVGLAYLNIGNNSLEGTIPCSIGKLNNLVRLVLEENKLVGNISTFISNLTILSELYLSGNNLEGCIPSNIRYCIKLQILSISYNKLSGVIPNQTFIYLEDLIDIYLENNSLTGPIPLEFGNMKHISILYLNSNKLSGEIPKDLASCYTLVELKLEGNNFHGGIPSFLGSLRSLELLDISNNNLSGTIPLELENLTLLNNLNLSFNHLYGEVPIGGVFSNISSISLTGNKNLCGGIPQLKLPACVRVSSKKHKRSLKSKLIPISVISGVLISFIAFIVVHFFTRNFKRLPSVSSFQNGNSRVTYGELHVATNGFSPSNLIGAGSFGSVYKGSLPNFERSIAVKVLNLETRGATKSFMAECKTLGKMKHRNLVKILTCCSSVDYKGEDFKAIVFEFMPNGSLEKLLHDNEGSDNHILHLQQSVDIALDVAHALDYLHNDTEQVVVHCDIKPSNVLLDKDLLAHLGDFGLARLIHGATEHSSKDQFSSSAIKGTLGYVPPEYGAGSQVSPQGDIYSYGILILEMLTGKRPTDNMFSESLTLLELCKKKIPEGILEIVNSQLLLPFGEDRTGIVGNQIRMCLVKFARIGVACSEEFPTHRMPIKDVIVKLNEIKSKLPCFEENNCVHRKA 1020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03321 1020 ProSitePatterns Protein kinases ATP-binding region signature. 713 736 IPR017441 GO:0005524
Tsu05g03321 1020 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 18 1009 - -
Tsu05g03321 1020 Gene3D Transferase(Phosphotransferase) domain 1 789 1016 - -
Tsu05g03321 1020 Gene3D Phosphorylase Kinase; domain 1 672 788 - -
Tsu05g03321 1020 Gene3D Ribonuclease Inhibitor 32 191 IPR032675 -
Tsu05g03321 1020 SMART LRR_typ_2 219 243 IPR003591 -
Tsu05g03321 1020 SMART LRR_typ_2 588 613 IPR003591 -
Tsu05g03321 1020 SMART LRR_typ_2 292 316 IPR003591 -
Tsu05g03321 1020 SMART LRR_typ_2 123 147 IPR003591 -
Tsu05g03321 1020 SMART LRR_typ_2 443 467 IPR003591 -
Tsu05g03321 1020 SMART LRR_typ_2 564 587 IPR003591 -
Tsu05g03321 1020 SMART LRR_typ_2 516 540 IPR003591 -
Tsu05g03321 1020 Pfam Leucine rich repeat 469 529 IPR001611 GO:0005515
Tsu05g03321 1020 Pfam Protein kinase domain 710 929 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g03321 1020 Pfam Leucine rich repeat N-terminal domain 33 71 IPR013210 -
Tsu05g03321 1020 SUPERFAMILY L domain-like 32 329 - -
Tsu05g03321 1020 Gene3D Ribonuclease Inhibitor 335 646 IPR032675 -
Tsu05g03321 1020 SUPERFAMILY RNI-like 269 607 - -
Tsu05g03321 1020 Gene3D Ribonuclease Inhibitor 192 334 IPR032675 -
Tsu05g03321 1020 SMART serkin_6 707 1004 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g03321 1020 SUPERFAMILY Protein kinase-like (PK-like) 684 1005 IPR011009 -
Tsu05g03321 1020 PANTHER LRR RECEPTOR-LIKE KINASE 18 1009 - -
Tsu05g03321 1020 ProSitePatterns Serine/Threonine protein kinases active-site signature. 836 848 IPR008271 GO:0004672|GO:0006468
Tsu05g03321 1020 ProSiteProfiles Protein kinase domain profile. 707 1010 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03321 Tsu-Chr5 44533063 44536298 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03321 30 1007 Receptor kinase-like Gene Family AT3G47570 42.583 0.0 751
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Tsu05g03321 Pkinase 9.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03321 - - mtr:MTR_1g029940 1260.74