Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03313 ATGGCTCTATTGCAACCAAGCCTTCTAGATCCAAAAATCTGGCAGAGTTGTGCTGGTGACGCCGTCAAAATTCCAAAACTACATTCCAAAGTTTACTATTTCCCATTAGGGCACTTAGAACACGCAAACCCTAACCCAAACACTGAATCACTTTCACTTATCAATAGCTACCGTCCATTCATTCCATGCATCATCTCATCGGTTGATTTCCTTGCCGATCCTCAAACCGATGAGGTCTACACCAAATTGCTCCTAACTCCCGTCATTGACGGTAGTTCAGTTGAACCTCTCGAGGTTCATGATCATGATGATGGAGATGATTATGTTGTTTCGTCTGGCAAGACTCTCAGTCAATCTGATGCTAATAACGGCGGTGCATTCTCCGTACCTAGTAAATGCGCCAAATTGATCTTCCCTCCACTTGAATTGGAAGCAAAATTGCCGGCTCAAGAACTCTCCATCACCGATGTTCATGGTATTGTCTGGGAGTTTCGCCATGTCTACCGTGGGAATCCAAAGCGACACATGTTCACCCATAACTGGAGTCAGTTCGTTGACAAGAAGAAACTCGTCGGTGGTGATTcccttatttttatgaaaaattcaACGGGAAAAATCTATGTCGGAATCCGTCGGGTCAAAAAGATTGTTGCCGCCGCTGTTGCGCAAAGGAAGGAATTGGTGGTTATGGAAGCGGTGAAATTGGCGGAAAAGAACGAGGCATTTGAAGTTGTGTACCATCCAACCACCGGTGATAATTTTGTTGTGGATGCTAAGGTTGTAGAGGATGCAATGAAGATTAATTGGAATTGTGGAATGAGAGTTAAACGCTCTTTGAAGAATGATGATTCTTCAGTATCGGTGCAGCATGGGACAATCACTAATCTTTGTGCTCCTTCTAATCGTCCATGGGGCATGCTTCAGGTTAAATGGGATGAAGCTAAAGTCTTGGAAAATACAATACAAGTCAGTCCTTGGCAGATTGAATATAGTTTCGACGCATCTTCATTGCATCTACAATATCCTCCAACAAAAAGGGTTAAAGTTGCCGAGGATTCTACTTTATCTAATGACATACCGGAAGTCGGGCATAATTCTTTTTCAACATCAAAGTTTGTCGATGCAAACAACTGCAACACTAAAAAAGTTACTTTTAAGTTATTTGGTACTACCATACAAGTTGGAAGTGATGTGGATGATTCActtgcaaaaaaataa 1218 0.413 MALLQPSLLDPKIWQSCAGDAVKIPKLHSKVYYFPLGHLEHANPNPNTESLSLINSYRPFIPCIISSVDFLADPQTDEVYTKLLLTPVIDGSSVEPLEVHDHDDGDDYVVSSGKTLSQSDANNGGAFSVPSKCAKLIFPPLELEAKLPAQELSITDVHGIVWEFRHVYRGNPKRHMFTHNWSQFVDKKKLVGGDSLIFMKNSTGKIYVGIRRVKKIVAAAVAQRKELVVMEAVKLAEKNEAFEVVYHPTTGDNFVVDAKVVEDAMKINWNCGMRVKRSLKNDDSSVSVQHGTITNLCAPSNRPWGMLQVKWDEAKVLENTIQVSPWQIEYSFDASSLHLQYPPTKRVKVAEDSTLSNDIPEVGHNSFSTSKFVDANNCNTKKVTFKLFGTTIQVGSDVDDSLAKK 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03313 405 SMART B3_2 114 214 IPR003340 GO:0003677
Tsu05g03313 405 CDD B3_DNA 114 212 IPR003340 GO:0003677
Tsu05g03313 405 Pfam B3 DNA binding domain 114 213 IPR003340 GO:0003677
Tsu05g03313 405 Gene3D - 268 336 - -
Tsu05g03313 405 SUPERFAMILY DNA-binding pseudobarrel domain 113 214 IPR015300 -
Tsu05g03313 405 ProSiteProfiles B3 DNA-binding domain profile. 112 214 IPR003340 GO:0003677
Tsu05g03313 405 Gene3D - 112 213 IPR015300 -
Tsu05g03313 405 PANTHER AUXIN RESPONSE FACTOR 228 355 - -
Tsu05g03313 405 PANTHER AUXIN RESPONSE FACTOR 7 221 - -
Tsu05g03313 405 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 7 221 IPR044835 GO:0003677|GO:0006355|GO:0009725
Tsu05g03313 405 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 228 355 IPR044835 GO:0003677|GO:0006355|GO:0009725
Tsu05g03313 405 Pfam Auxin response factor 232 304 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03313 Tsu-Chr5 44444620 44446477 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03313 9 362 B3 DNA Binding Superfamily AT1G77850 37.562 7.77e-91 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Tsu05g03313 B3 8.4e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03313 - - mtr:MTR_5g082140 414.461