Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03308 ATGGCTCTATTGCAACCAAGCCTTGTAGATCCAAAAATCTGGCAGAGTTGTGCCGGTGACGCCGTCAAAATTCCAAAACTACATTCCAAAGTTTACTATTTCCCATTAGGGCACTTAGAACACGCAAACCCTAACCCAAACACTGAATCACTTTCACTTATCAATAGTTGCCGTCCTTTCATTCCATGCATCATCTCATCGGTTGATCTCCTCGCCGATCCTCAAACCGATGAGGTCTACACCAAATTGCTCCTAACTCCCGTCATTGACGGTAGTTCAGTTGAACCTCTCGAGgttcatgatgatgatgatggagatGATTATGTTGTTTCGTCTGGAAAGACGATCAGTCAATCTGATGCTAATAACGGCGGTGCATTCTCCGTACCTAGCAAATGCGCCAAATTGATCTTCCCTCCACTTGAATTAGAAGCCAAATTGCCGGCTCAGGAACTCTCCATCACCGATGTTCACGGTAATGTCTGGGAGTTTCGCCATGTCTACCGTGGGAATCCAAAGCGACACATGTTCACCCATAACTGGAGTCAGTTCGTTGACAAGAAGAAACTCGTCGGTGGTGATTcccttatttttatgaaaaattcaACCGGAAAAATCTATGTCGGAATCCGTCGGGTCAAAAAGATTGCTGCCGCCGCTGTTGTGCAAAAGAAGGAATTGGTGGTTATGGAAGCGGTGAAATTGGCGGAAAAGAACGAGGCATTTGAAGTTGTGTACCATCCAACCGCCGGTGATAATTTTGTTGTGGATGCTAAGGTTGTAGAGGATGCAATGAAGATTAATTGGAATTGTGGAATGAGAGTTAAACGCTCTTTGAAGAATGATGATTCTTCAATATCGGTGCAGCATGGGACAATCACTAATCTTTGTGCTCCTTCTAATCGTCCATGGGGCATGCTTCAGGTTAAATGGAATGAAGCTAAAGTCTTGGAAAATACATTACAAGTCGGTCCTTGGCAGATTGAATATAGTTTCGACGCACCTTCATTGCATCTACAATATCCTCCAACAAAAAGGGTTAAAGTTGCCGAGGATTATACTTTATCTAATGACATACAGGAAGTCAGGCATAATTCTTTTTCGACATCAAAGTTTGTCGAAGCAAACAACTGCAACACTAGAAAAGTTACTTTTAAGTTATTTGGTACTATCATACAAGTTGGAAGTGATGTGGATGATTCActtgcaaaaaaataa 1218 0.408 MALLQPSLVDPKIWQSCAGDAVKIPKLHSKVYYFPLGHLEHANPNPNTESLSLINSCRPFIPCIISSVDLLADPQTDEVYTKLLLTPVIDGSSVEPLEVHDDDDGDDYVVSSGKTISQSDANNGGAFSVPSKCAKLIFPPLELEAKLPAQELSITDVHGNVWEFRHVYRGNPKRHMFTHNWSQFVDKKKLVGGDSLIFMKNSTGKIYVGIRRVKKIAAAAVVQKKELVVMEAVKLAEKNEAFEVVYHPTAGDNFVVDAKVVEDAMKINWNCGMRVKRSLKNDDSSISVQHGTITNLCAPSNRPWGMLQVKWNEAKVLENTLQVGPWQIEYSFDAPSLHLQYPPTKRVKVAEDYTLSNDIQEVRHNSFSTSKFVEANNCNTRKVTFKLFGTIIQVGSDVDDSLAKK 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03308 405 Gene3D - 112 213 IPR015300 -
Tsu05g03308 405 CDD B3_DNA 114 212 IPR003340 GO:0003677
Tsu05g03308 405 SUPERFAMILY DNA-binding pseudobarrel domain 113 214 IPR015300 -
Tsu05g03308 405 SMART B3_2 114 214 IPR003340 GO:0003677
Tsu05g03308 405 Pfam Auxin response factor 232 305 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Tsu05g03308 405 PANTHER AUXIN RESPONSE FACTOR 7 220 - -
Tsu05g03308 405 PANTHER AUXIN RESPONSE FACTOR 228 354 - -
Tsu05g03308 405 Pfam B3 DNA binding domain 114 213 IPR003340 GO:0003677
Tsu05g03308 405 ProSiteProfiles B3 DNA-binding domain profile. 112 214 IPR003340 GO:0003677
Tsu05g03308 405 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 7 220 IPR044835 GO:0003677|GO:0006355|GO:0009725
Tsu05g03308 405 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 228 354 IPR044835 GO:0003677|GO:0006355|GO:0009725
Tsu05g03308 405 Gene3D - 268 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03308 Tsu-Chr5 44420555 44422413 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03308 9 351 B3 DNA Binding Superfamily AT1G77850 38.303 8.92e-91 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Tsu05g03308 B3 4.6e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03308 - - mtr:MTR_5g082140 410.609