Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03306 ATGTCTCATCAAGAACTTCACCCTGTAGATCCAAAACTTTGGCAGAGTTGCGCCGGTGACTCCATTAAAATTCCAAAACTACATTCAAAAGTTTACTATTTTCCATTAGGTCACTTAGAACATGCCAATCCTTCTCCAAACACTCAATCAATTTCACTTATCAATAGCTACCGTCCATTCATTCCATGCATCATCCAGGGACGGATCGAGACATTTAATAATGGTGTCTTCACTAAATTGCTCCTTACTCCCATAACTAACGGCACCATTGAACCTCCTAACGTTCCCCAAGAAGATCAAGAAAACAACGTTGAGGTTGTTTCGTCTTTCAAGACTCTCACCCGATCTGATTCTAATAATGGTGGTGCATTCTCCGTACCTCGTGGTTGCGCTAACAAGATCTTCCCACCCCTTGATTTAAAAGCCAAACCGGCGCCTTTTCAAGAACTTTCTTGTACCGATGTTCACGGTGAAGTATGGAAGTTTCGTCATATATACAGTGGGGCTCCCCAGCGACATTTGATCACCTCCGGCTGGAGTAAGTTTGTGGACAAGAAGAAACTCGTTGTTGGTGACTCTTTAGTTTTCTTGAAAAATTCTACCGGAAGGATCTTCATCGGAATTCGCAGGAAGTTGGATGCCTCAAGAAGCGGGAAAATAAAGGAGAAAGCGGTTATAGAGGCAGCCGAATTGGCTGAGAAGAACAAAGCATTTGAAATTGTTTACTATCCGACGGTTGGTGATGGTGATAATTTTGTGGTGGATGCTAATGTTGTGGAGGATGCAATGAAGATCAATTGGAATTGTGGAATGAGAGTTAAACTTCCTTTGAAGAATGATGTTTCTTCAAAGGGAACAATCTCTAATCTCTATGCTTCTTCTAATCATCCATGGCGCATGCTTCAGGTTAAATGGGATGAACCTAAAGTCTCGGAAAATACAATGCGAGTTAGTCCTTGGAGAACAGAGCGACACTCGTCCGTTCCAATGGTAGAGATTCCTCATTCATCAATTGGATCCTTTAATCAGAAATTGATGAGTTGTGATACTCTTTCCGCATCAACTTCTTCCTTTTCCGGTACCCACAATTGCAGCAACAAAAAAGTTAGTCCCAATTCAATTAAGCTTTTTGGTGCGATCATACAATTATCTGTTGGAAGCATTTCACTTGGTTCTGATATCAATGGAGACGATGGTTGTAAGGGCTCCAATGTTATGGAAGGCATTAACAAAACTTGCACAAAAATAACTCAATAG 1257 0.4121 MSHQELHPVDPKLWQSCAGDSIKIPKLHSKVYYFPLGHLEHANPSPNTQSISLINSYRPFIPCIIQGRIETFNNGVFTKLLLTPITNGTIEPPNVPQEDQENNVEVVSSFKTLTRSDSNNGGAFSVPRGCANKIFPPLDLKAKPAPFQELSCTDVHGEVWKFRHIYSGAPQRHLITSGWSKFVDKKKLVVGDSLVFLKNSTGRIFIGIRRKLDASRSGKIKEKAVIEAAELAEKNKAFEIVYYPTVGDGDNFVVDANVVEDAMKINWNCGMRVKLPLKNDVSSKGTISNLYASSNHPWRMLQVKWDEPKVSENTMRVSPWRTERHSSVPMVEIPHSSIGSFNQKLMSCDTLSASTSSFSGTHNCSNKKVSPNSIKLFGAIIQLSVGSISLGSDINGDDGCKGSNVMEGINKTCTKITQ 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03306 418 Gene3D - 108 212 IPR015300 -
Tsu05g03306 418 ProSiteProfiles B3 DNA-binding domain profile. 109 212 IPR003340 GO:0003677
Tsu05g03306 418 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 219 335 IPR044835 GO:0003677|GO:0006355|GO:0009725
Tsu05g03306 418 PANTHER AUXIN RESPONSE FACTOR 6 215 - -
Tsu05g03306 418 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 215 IPR044835 GO:0003677|GO:0006355|GO:0009725
Tsu05g03306 418 Pfam Auxin response factor 228 300 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Tsu05g03306 418 SUPERFAMILY DNA-binding pseudobarrel domain 108 210 IPR015300 -
Tsu05g03306 418 SMART B3_2 109 212 IPR003340 GO:0003677
Tsu05g03306 418 CDD B3_DNA 110 210 IPR003340 GO:0003677
Tsu05g03306 418 PANTHER AUXIN RESPONSE FACTOR 219 335 - -
Tsu05g03306 418 Pfam B3 DNA binding domain 110 211 IPR003340 GO:0003677
Tsu05g03306 418 Gene3D - 266 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03306 Tsu-Chr5 44402865 44405791 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03306 1 334 B3 DNA Binding Superfamily AT1G77850 38.660 1.95e-84 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Tsu05g03306 B3 6.3e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03306 - - mtr:MTR_5g082140 390.578