Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03297 ATGGCGGCAAGTAACCACACAGTGTTGCAATTCTCTTCTTCAAATACCTTATCGGCAAAAATTCATCCTCTCGTTATCTTCAACATCTGTGATTGCTATGTCCGTCGTCCTGATCAAGCGGAGCGCGTCATCGGAACATTACTCGGTTCCGTTCTTCCCGACGGAACTGTTGATATCCGTAATTCATACGCTGTTCCTCACAACGAGTCCGGTGATCAGGTTGCTTTGGAAATTGAGTACCACCATACCATGTTACTATCCCACCAAAAAGTGAATCCCAAGGAAGTTATAGTTGGATGGTATTCAACTGGTCTTGGAGTAACTGGTGGCAGTGCATTAATCCATGAATTTTATTCTCGAGAAGTATCCAACCCTATACATTTGACTGTTGATACAGGATTTGCAGATGGAGAGGGCACCATAAAAGCATTTGTTTCAAACAATTTATCTCTTGGAGACCAGCAAATTTCTGCACACTTTCAAGAAATTCCTTTGGATCTTCGTATGGTTGAAGCTGAGCGCATTGGATTTGATAATCTGAAGTCAACTTATGTTGATAAAATCCCTTCTGATTTAGAAGGCATGGAAGCATCAATGACACATCTATTGGCCTTGATTGATGACACCTATAAATACGTTGATGATGTTGTGGAAGGGCGTGTCATTCCAGACAACAACATTGGGAAATGTATATCAGATGCTGTAGGTTCCCTTCCCAAAATCCCGTCCTCGGCTTTTGATAAGCTTGTGAATGACAGCTTACAGGATCACTCGCTCATGCTATACTTATCTAGCATCACAAGGACACAGCTCAGCCTGGCTGAAAAATTGAACACGGCTGCTCAGATTCTGTGA 855 0.4246 MAASNHTVLQFSSSNTLSAKIHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYAVPHNESGDQVALEIEYHHTMLLSHQKVNPKEVIVGWYSTGLGVTGGSALIHEFYSREVSNPIHLTVDTGFADGEGTIKAFVSNNLSLGDQQISAHFQEIPLDLRMVEAERIGFDNLKSTYVDKIPSDLEGMEASMTHLLALIDDTYKYVDDVVEGRVIPDNNIGKCISDAVGSLPKIPSSAFDKLVNDSLQDHSLMLYLSSITRTQLSLAEKLNTAAQIL 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03297 284 Pfam Maintenance of mitochondrial structure and function 171 277 IPR024969 -
Tsu05g03297 284 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F 17 283 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Tsu05g03297 284 Hamap Eukaryotic translation initiation factor 3 subunit F [EIF3F]. 17 280 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Tsu05g03297 284 ProSiteProfiles MPN domain profile. 19 150 IPR037518 -
Tsu05g03297 284 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 17 283 - -
Tsu05g03297 284 CDD MPN_eIF3f 20 277 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Tsu05g03297 284 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 17 120 IPR000555 GO:0005515|GO:0008233|GO:0008237
Tsu05g03297 284 SMART pad1_6 18 149 IPR000555 GO:0005515|GO:0008233|GO:0008237
Tsu05g03297 284 Gene3D Cytidine Deaminase, domain 2 5 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03297 Tsu-Chr5 44328636 44333001 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03297 2 284 Eukaryotic Initiation Factors Gene Family AT2G39990 73.883 3.60e-154 430
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03297 K03249 - gmx:100786716 488.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01806 03 18598726 18602595 Tsu05g03297 05 44328636 44333001 ECH
Tsu05g03297 05 44328636 44333001 Tsu05g03297 05 44328636 44333001 ECH