Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03296 ATGGAAGAGAGCATGTCAGGCTTTTGCATGAGATCATCTGGAAGTAAAAGTGGGAGCAGCAGCAGTAGCACTGGCACAAAGTGTGGACGTTGGAATCCAACAACAGAACAAGTTAAACTTCTAACTGAACTTTTCAGAGCAGGGCTCAGAACTCCAAGCACTgatcaaattcaaaaaatatcaaatcaacTTAGTTTTTATGGTAAGATTGAAAGCAAGAATGTGTTCTATTGGTTTCAAAATCATAAAGCTAGGGAAAGACAAAAACGTAGGAAGGTTtcttttgatgatgacaaagaTGTTTTCATTCATAGAGATCACAATTCTATCAATGCTTCAACACAAAGGTTTGTTGAGATGTACTCAGAGCCTGATAGGGTGATTGAGACTCTTGAGCTTTTTCCATTGAACTCATTTGGTGAATCAGAATCATCAGAGAAGCTGAATATGCATATAAATGAATGCAGGGAAAATAATACAATGTTTGCATACACATGTACAATGGGAGAACAAATGGAGCATCCACCATTAGACTTGAGGTTGAACTTTGTTTAG 555 0.3514 MEESMSGFCMRSSGSKSGSSSSSTGTKCGRWNPTTEQVKLLTELFRAGLRTPSTDQIQKISNQLSFYGKIESKNVFYWFQNHKARERQKRRKVSFDDDKDVFIHRDHNSINASTQRFVEMYSEPDRVIETLELFPLNSFGESESSEKLNMHINECRENNTMFAYTCTMGEQMEHPPLDLRLNFV 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03296 184 CDD homeodomain 30 90 IPR001356 GO:0003677
Tsu05g03296 184 Gene3D - 27 95 - -
Tsu05g03296 184 Pfam Homeodomain 28 88 IPR001356 GO:0003677
Tsu05g03296 184 MobiDBLite consensus disorder prediction 1 31 - -
Tsu05g03296 184 MobiDBLite consensus disorder prediction 8 31 - -
Tsu05g03296 184 SMART HOX_1 26 93 IPR001356 GO:0003677
Tsu05g03296 184 SUPERFAMILY Homeodomain-like 29 91 IPR009057 -
Tsu05g03296 184 PANTHER WUSCHEL-RELATED HOMEOBOX 7 1 170 - -
Tsu05g03296 184 ProSiteProfiles 'Homeobox' domain profile. 24 89 IPR001356 GO:0003677
Tsu05g03296 184 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 1 170 IPR044555 GO:0003700|GO:0099402
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03296 Tsu-Chr5 44321210 44322448 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03296 18 184 Wox Gene Family AT3G11260 56.983 1.16e-60 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Tsu05g03296 Homeodomain 5.6e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03296 - - cam:101494967 268.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g03296 05 44321210 44322448 Tsu05g03296 05 44321210 44322448 ECH
Tsu03g01808 03 18619428 18622753 Tsu05g03296 05 44321210 44322448 PCT