Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03293 ATGCCTTCTTCATCTCCTACTTTGTTCTCAAAATGTACCATAATTCCAGACCAAAAATCCACTATTGGAAACCTTAAACTCTCTGTTTCAGATCTTCCTATGCTTTCTTGTCACTATATCCAAAAAGGTTGTCTCTTCACAAAACCTTCAATTCCCTTTCATAATCTAATTCCTATCATCAAAACTGCTCTATCTAGAACTCTCTCAATCTTTCCACCTCTAGCCGGTCGTTTAACCACCGATTCCGATGGTTATGTTTACTTAACCTGCAATGACGCCGGCGTTGATTTCATCACCGCCGTTGCCACTGAACTCTACATCCATGATCTTTTATCGACCACGGATGTCAATGACtctttcaaagaattttttacttttgatcGTAAAGTCAGTTACAGTGGCCATTATTCTCCAATAATGGCCGTTCAGGTAACTGAACTTTCCGATGGTATTTTTATTGGCTGTGCCGTTAATCATGCCGTCACTGACGGTACTTCCTTCTGGAATTTCTTCAATACATTTGCACAATTATGCAGAGGAGCAAACAAATGTATCAGAAATTCTCCAAGCTTCCGTCGCGACTCTGTTTTAATCTCAAACGCCGTTCTCCGGTTACCGGAGGGTGGTCCGGTAGTAACATTCAACGCCGACGCACCGATTAGAGAAAGAATCTTTAGCTTCAGCAGAGAATCAATTCAAAAACTCAAAGCCAGAGCTAATAACCGTCGCTGGACGGAAAATAATAACGCCGTTGAATTGATGCAGAAACACATGAACGATCattataacaataacaatagcaACAACCAAAAAGAAAACGGTAAAGTAGCGGCGTTAATTGAGAATTGGTTTAAGAACAATGTTAATTCAAAACAGCAAACGGTTACCGTAACAGAAACAGAAACAGTTGAGATTTCATCTTTTCAATCTCTATGCGCGTTACTATGGCGTGCAGTCACGCGCGCGAGGAAATTTCATccatccaaaacaacaacatttaGAATGGCGGTTAATTGTAGACACCGTGTTAAACCGGAGCTAGACTCATTTTATTTCGGAAACGCTATCCAAAGCGTTCCGACATACGCTTCGGCCGGAGATGTAATGTCTAAAGATATAAGATGGTGTGCTGAGCAGCTGAATAAAAACGTGAAGGCGCATGATAATGTTATGGTGAGGAAGTTTGTAGAGGATTGGGAGAACAATCCAAGGTGTTTTCCATTGGGGAATCCAGATGGTGGTTCTATAACAATGGGAAGTTCTCCGAGGTTTCCGATGTACGATAATGATTTTGGTTGGGGAAAACCGTTAGCGGTTAGGAGTGGGAAAGCGAATAAATTTGACGGTAAGATTTCGGCGTTTCCAGGGAGAGATGGAAGTGGGACCGTTGATTTAGAGGTTGTTTTGGCGCCAGAAACTATGGCGGGTCTTGAGAATGATGCTGAGTTTATGCTTTATGCTACTAGACAGTTATGA 1476 0.4031 MPSSSPTLFSKCTIIPDQKSTIGNLKLSVSDLPMLSCHYIQKGCLFTKPSIPFHNLIPIIKTALSRTLSIFPPLAGRLTTDSDGYVYLTCNDAGVDFITAVATELYIHDLLSTTDVNDSFKEFFTFDRKVSYSGHYSPIMAVQVTELSDGIFIGCAVNHAVTDGTSFWNFFNTFAQLCRGANKCIRNSPSFRRDSVLISNAVLRLPEGGPVVTFNADAPIRERIFSFSRESIQKLKARANNRRWTENNNAVELMQKHMNDHYNNNNSNNQKENGKVAALIENWFKNNVNSKQQTVTVTETETVEISSFQSLCALLWRAVTRARKFHPSKTTTFRMAVNCRHRVKPELDSFYFGNAIQSVPTYASAGDVMSKDIRWCAEQLNKNVKAHDNVMVRKFVEDWENNPRCFPLGNPDGGSITMGSSPRFPMYDNDFGWGKPLAVRSGKANKFDGKISAFPGRDGSGTVDLEVVLAPETMAGLENDAEFMLYATRQL 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03293 491 Pfam Transferase family 7 484 - -
Tsu05g03293 491 Gene3D - 7 204 IPR023213 -
Tsu05g03293 491 PANTHER ANTHOCYANIN 5-AROMATIC ACYLTRANSFERASE 6 485 - -
Tsu05g03293 491 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 6 485 - -
Tsu05g03293 491 SUPERFAMILY CoA-dependent acyltransferases 57 180 - -
Tsu05g03293 491 Gene3D - 219 482 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03293 Tsu-Chr5 44296834 44298547 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03293 59 479 Monolignol Biosynthesis Gene Families AT5G48930 25.792 5.98e-32 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03293 - - gmx:100500612 771.926
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01805 03 18594683 18596086 Tsu05g03293 05 44296834 44298547 ECH
Tsu05g03293 05 44296834 44298547 Tsu05g03293 05 44296834 44298547 ECH
Tsu05g03293 05 44296834 44298547 Tsu03g01805 03 18594683 18596086 PCT