Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03285 ATGGATTTAGAAACCCTTTATTCTCCTTATTTTATGTTGGATTCAAATTGGTTTGTTGAAGAGAGTCAAAAAACAGAATGGAGTAGAGAAGATAATAAGAAATTTGAAAGTGCTCTTGCTATATATGATAAGGATACACCAGATAGATGGTTAAAAGTTGCTGAAATGATTCCTGGTAAAACTGTTTATGATGTGATTAAGCAGTATAGGGAATTGGAAGAAGATGTTTGCGAAATCGAAGCTGGTAATGTTCCGATTCCCGgttatctttcttcttctttcactttTGAGGTTGTTGAAAATCAGAACTATGATGGAAGTAAAAGAAGACATGTAACTGTTAGAGGTTCTGATCATGAGAGGAAGAAAGGTGTTCCTTGGACTGAAGAGGAACATAGGCGTTTTCTGATGGGACTACTAAAGTATGGAAAAGGCGATTGGAGAAACATCTCTCGCAATTTCGTCGTGACGAAAACACCAACACAAGTAGCAAGTCATGCACAAAAGTACTACATAAGGCAAAAGGTTTCATCTGGAGGCAAAGATAAAAGAAGACCAAGCATTCATGATATTACAACTGTTACTCTTACAGAAACTTCTTCTCCATCAGATAATAAGCAGAAAATGGGTTGGACTAGTAGCCACTACAATGATGGATCACTACAAGGACAAGATCTCTATGACTGTTCTTTTCATGAATCTTATGCTAAGATGAAAGTTTCCGGTTTCGCGACGGCTTCTAGAGACTTCAACAAAGGAGCTGTTTTTGGTATTCATGCACTTTAA 786 0.3613 MDLETLYSPYFMLDSNWFVEESQKTEWSREDNKKFESALAIYDKDTPDRWLKVAEMIPGKTVYDVIKQYRELEEDVCEIEAGNVPIPGYLSSSFTFEVVENQNYDGSKRRHVTVRGSDHERKKGVPWTEEEHRRFLMGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKYYIRQKVSSGGKDKRRPSIHDITTVTLTETSSPSDNKQKMGWTSSHYNDGSLQGQDLYDCSFHESYAKMKVSGFATASRDFNKGAVFGIHAL 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03285 261 SUPERFAMILY Homeodomain-like 25 79 IPR009057 -
Tsu05g03285 261 SMART sant 23 75 IPR001005 -
Tsu05g03285 261 SMART sant 123 173 IPR001005 -
Tsu05g03285 261 CDD SANT 126 170 IPR001005 -
Tsu05g03285 261 Gene3D - 125 176 - -
Tsu05g03285 261 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 3 211 - -
Tsu05g03285 261 Gene3D - 19 86 - -
Tsu05g03285 261 SUPERFAMILY Homeodomain-like 121 175 IPR009057 -
Tsu05g03285 261 ProSiteProfiles Myb-like domain profile. 19 73 IPR001005 -
Tsu05g03285 261 ProSiteProfiles Myb-like domain profile. 119 171 IPR001005 -
Tsu05g03285 261 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 122 174 IPR006447 GO:0003677
Tsu05g03285 261 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 3 211 IPR043363 -
Tsu05g03285 261 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 119 175 IPR017930 -
Tsu05g03285 261 ProSiteProfiles SANT domain profile. 127 175 IPR017884 -
Tsu05g03285 261 Pfam Myb-like DNA-binding domain 25 71 IPR001005 -
Tsu05g03285 261 Pfam Myb-like DNA-binding domain 126 170 IPR001005 -
Tsu05g03285 261 CDD SANT 26 72 IPR001005 -
Tsu05g03285 261 ProSiteProfiles SANT domain profile. 22 76 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03285 Tsu-Chr5 44192234 44194056 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu05g03285 Myb_DNA-binding 1e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03285 - - cam:101492144 464.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g01327 04 13455396 13458229 Tsu05g03285 05 44192234 44194056 ECH
Tsu05g02726 05 37304420 37306836 Tsu05g03285 05 44192234 44194056 ECH
Tsu03g00929 03 8600108 8602068 Tsu05g03285 05 44192234 44194056 ECH
Tsu05g03285 05 44192234 44194056 Tsu05g03285 05 44192234 44194056 ECH