Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03271 ATGCTAGTAAATGAGGACAATGTTCATGTTGTTTTGGACATAAACAACAATGTCTGTCACCGGAGTAACGACTCCGGTGACACTGACAGGTCAGATGAGGAACAAATTCAAAGGTCTGAGATTGTTGGAGTGTCTGACAAACAAAGAGGATCTATTGATTCATCTGAATCAGTTGAATCAGAATGTTCTATTGAGTTGGATCTGGATGGTGTTGTAGTTTCTGATGTTAAGGTACATTTGGATAAAGTGGAGAGAGATTGTAGGATTTGTCATCTTAGTATGGATATGACAAATCATGAATCTGGAATTCCTATGGAGCTTGGTTGTTCTTGTAAGGAGGATTTGGCTGCTGCTCATAAACATTGTGCTGAAGCTTGGTTCAAGATTAAGGGAAATAAAACATGTGAAATCTGTGGATCAATTGCACACAATGTAGCTGGTGCTATTGAAGTTCAAATGACAGAACAATATAATGAATCAAGTGATCCTTCCATGGTGCCAACAACCGGACCTTCACCGCCATCAGAAACTCGAAATTTTTGGCAAGGACACCGATTTTTAAATTTCCTACTAGCATGTATGGTTTTTGCCTTTGTCATATCATGGCTTTTTCACTTCAATGTTCCCTCTTGA 633 0.3886 MLVNEDNVHVVLDINNNVCHRSNDSGDTDRSDEEQIQRSEIVGVSDKQRGSIDSSESVESECSIELDLDGVVVSDVKVHLDKVERDCRICHLSMDMTNHESGIPMELGCSCKEDLAAAHKHCAEAWFKIKGNKTCEICGSIAHNVAGAIEVQMTEQYNESSDPSMVPTTGPSPPSETRNFWQGHRFLNFLLACMVFAFVISWLFHFNVPS 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03271 210 MobiDBLite consensus disorder prediction 157 176 - -
Tsu05g03271 210 SUPERFAMILY RING/U-box 84 141 - -
Tsu05g03271 210 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 147 IPR013083 -
Tsu05g03271 210 SMART ringv_2 86 139 IPR011016 GO:0008270
Tsu05g03271 210 PANTHER ZINC FINGER, RING-CH-TYPE 12 210 - -
Tsu05g03271 210 Pfam RING-variant domain 87 138 IPR011016 GO:0008270
Tsu05g03271 210 ProSiteProfiles Zinc finger RING-CH-type profile. 79 145 IPR011016 GO:0008270
Tsu05g03271 210 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 12 210 - -
Tsu05g03271 210 CDD RING_CH-C4HC3_MARCH 87 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03271 Tsu-Chr5 44019563 44022882 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03271 26 210 C3H Transcription Factor Family AT5G05830 58.824 2.67e-70 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03271 - - mtr:MTR_5g081560 364.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g01265 04 12829779 12833438 Tsu05g03271 05 44019563 44022882 ECH
Tsu05g03271 05 44019563 44022882 Tsu05g03271 05 44019563 44022882 ECH