Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03254 ATGGCTCCTTCTACTGATATCAATCATCTTTCTCATCCATGTATATATGCAGGGGATTATGTTTCTTCACATCCAGAAAGAAAGTCTGGTTTCATGAAATGGCTTAGTAAGCTTTTCAAAGGTGGGTCCAATAGAGGAAGGAGTGGTCGTCATCTTCATGATCCTTCTGAGGAAAACTTGTCTTGGCGTGCTCCATCTAGAGCTTTGGATGATCGTGCTAGAGCTCAGAAGGAGAAAGAGGATTTAGGCCATGCAATGTCCCTTTCTTCAGCTGAAGATATGAAGCGACCGAATGCTCATCAAGGATATAGGTGGGGGgaagaaaatgatgaagatTATGGAAAGTCACTTCATGATAACTTTAGCTCATCTGCACACCCTCCATATGCTCCTGCACCATTTTATCCAACTGAATATAGAAGAATATGTGGTGGCTGCAACCAAGACATAATCTATGGAAATTGTTTAGGCTGCATGGATACTTATTTTCATCCAGATTGCTTTCGATGCCACTCTTGTCGCTATCCTATTACGGAGCGCGAGTTTTCTTTATCAGGGAAGCATCCATATCACAAATCTTGTTTTAAAGAGTTGACTCATCCAAAATGTGAAGTTTGCTTCCAATTTATTCCTATAAATGCTGCTGGTTTGATTGAGTATAGATGCCATCCCTTTTGGTCCCAAAAGTATTGTCCTTCTCATGAATATGATAATACAGGTCGCTGTTGTAGTTGCGAAAGATTAGAGCCTCGGAATATAAAATACTATCGACTTGAAGACGGGCGAAGCTTGTGCTTAGAGTGCATGGAATCTGCTATAATGGATACCGGTGATTGTCAGCCTTTATACCATTCAATCAGAGATTATTATGAAGGAATGCATATGAGAATAGATCAGCAAGTTCCAATGCTTCTTGTTGAAAGAGAAGCACTTAATGATGCTATTGTTGGAGAGAAGAGTGGATTTCATCATTTGCCAGAAACAAGGGGTTTATGCCTTTCAGAAGAACAGACTGTAACCAGtATACATAGAAGGCCAAGAATTGGAGGCCATAGACTTATTGGAATGAGAACTCAACCTCAGAAGCTGACTAGAAAATGTGAAGTTACTGCAATTCTTGTTCTATATGGTTTACCAAGGTTGTTGACAGGTGCTATACTCGCGCATGAGTTGATGCATGCATGGTTACGCCTTAAAGGTTATCGGAATCTCAATCCTGAAGTAGAGGAAGGAATTTGTCAAGTTCTTTCATATATGTGGCTTGAGTCTGAAGTTATGCCAACAAACTCTAATAGTATGCCATCAACATCCACTGctgcttcttcttcctcttcctcttcatcctCAAAGAAAGGCGCACAGTCTCATGTTGAAAATAAATTGGGTGAATTCTTCAAGTATCAAATTTTCAATGATTCTTCCCCAGCTTATGGTGGGGGTTTTAGAGCTGCTAATGAAGCTGTTAATAAGTATGGTTTACGTAGTACTCTTGATCATATTCGTTTAACTGGTTTTTTCCCTGTGTAA 1527 0.3864 MAPSTDINHLSHPCIYAGDYVSSHPERKSGFMKWLSKLFKGGSNRGRSGRHLHDPSEENLSWRAPSRALDDRARAQKEKEDLGHAMSLSSAEDMKRPNAHQGYRWGEENDEDYGKSLHDNFSSSAHPPYAPAPFYPTEYRRICGGCNQDIIYGNCLGCMDTYFHPDCFRCHSCRYPITEREFSLSGKHPYHKSCFKELTHPKCEVCFQFIPINAAGLIEYRCHPFWSQKYCPSHEYDNTGRCCSCERLEPRNIKYYRLEDGRSLCLECMESAIMDTGDCQPLYHSIRDYYEGMHMRIDQQVPMLLVEREALNDAIVGEKSGFHHLPETRGLCLSEEQTVTSIHRRPRIGGHRLIGMRTQPQKLTRKCEVTAILVLYGLPRLLTGAILAHELMHAWLRLKGYRNLNPEVEEGICQVLSYMWLESEVMPTNSNSMPSTSTAASSSSSSSSSKKGAQSHVENKLGEFFKYQIFNDSSPAYGGGFRAANEAVNKYGLRSTLDHIRLTGFFPV 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03254 508 Pfam LIM domain 143 196 IPR001781 -
Tsu05g03254 508 SMART lim_4 142 194 IPR001781 -
Tsu05g03254 508 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 137 168 - -
Tsu05g03254 508 PANTHER PROTEIN DA1-RELATED 2 21 508 IPR045218 -
Tsu05g03254 508 MobiDBLite consensus disorder prediction 429 453 - -
Tsu05g03254 508 CDD LIM_DA1 143 195 - -
Tsu05g03254 508 MobiDBLite consensus disorder prediction 43 84 - -
Tsu05g03254 508 ProSiteProfiles LIM domain profile. 141 201 IPR001781 -
Tsu05g03254 508 Gene3D Cysteine Rich Protein 130 200 - -
Tsu05g03254 508 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 21 508 - -
Tsu05g03254 508 ProSitePatterns LIM zinc-binding domain signature. 143 177 IPR001781 -
Tsu05g03254 508 MobiDBLite consensus disorder prediction 47 84 - -
Tsu05g03254 508 Pfam Protein DA1 292 503 IPR022087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03254 Tsu-Chr5 43848588 43852530 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tsu05g03254 DA1-like 2.5e-100 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03254 - - gmx:100784976 917.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01753 03 17945877 17950454 Tsu05g03254 05 43848588 43852530 PCT