Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03253 ATGAGTGCACAAGGACAACCACAAGTTCAAGTTCAAGGGATTGAAGAGGCGGTGCTTGATGACATTATCCGGCGACTTACGGAGGTCCGATTAGCCCGACCCGGGAAACAAGTTCAGCTATCTGAGGCTGAGATCAAGCAACTATGTACTGCTTCTAGAGATATCTTTCTTCAACAACCTAATTTGCTTGAACTTGAAGCCCCTATTAAGATTTGTGGTGACATTCATGGGCAGTACAGTGATTTGTTAAGGCTCTTTGAGTATGGAGGTTTGCCTCCTAAAGCTAATTATCTCTTTTTAGGGGACTACGTGGATCGTGGGAAGCAGAGCTTAGAAACCATATGTCtgttgcttgcttataaaatcaaatatcctGAGAACTTTTTCCTTTTGAGGGGAAATCACGAGTGCGCTTCCATTAATAGGATATATGGATTTTATGATGAATGTAAGAGAAGGTTTAATGTGAGGCTTTGGAAAGCTTTTACGGACTCTTTTAACTGCCTTCCTGTGGCAGCTCTTATAGATGATAAGATATTGTGCATGCATGGTGGTCTTTCCCCTGACCTCACAAATTTGGATCAAATCAGGATTCTGCCTCGTCCAGTTGCTATTCCCGACACTGGTTTGCTCTGTGATTTGCTTTGGTCTGATCCTGGTAGAGATGTGAAGGGTTGGGGCATGAATGACAGAGGAGTGTCCTACACTTTTGGCCCTGATAAGGTGGCTGAATTCTTAACTAAACATGACTTGGACCTTGTTTGCCGTGCTCATCAGGTTGTAGAGGATGGATATGAATTCTTTGCAGACAGGCAACTTGTGACAATATTTTCGGCTCCAAATTACTGTGGTGAATTTGACAATGCTGGTGCAATGATGAGTGTGGACGAGAACTTAATGTGCTCCTTCCAGATTCTTAAACCTgcagagaaaaaaaagttcGTGATGTCAAACAAGATGTGA 963 0.4123 MSAQGQPQVQVQGIEEAVLDDIIRRLTEVRLARPGKQVQLSEAEIKQLCTASRDIFLQQPNLLELEAPIKICGDIHGQYSDLLRLFEYGGLPPKANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNVRLWKAFTDSFNCLPVAALIDDKILCMHGGLSPDLTNLDQIRILPRPVAIPDTGLLCDLLWSDPGRDVKGWGMNDRGVSYTFGPDKVAEFLTKHDLDLVCRAHQVVEDGYEFFADRQLVTIFSAPNYCGEFDNAGAMMSVDENLMCSFQILKPAEKKKFVMSNKM 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03253 320 Gene3D - 11 318 IPR029052 -
Tsu05g03253 320 PRINTS Serine/threonine phosphatase family signature 68 95 IPR006186 GO:0016787
Tsu05g03253 320 PRINTS Serine/threonine phosphatase family signature 97 124 IPR006186 GO:0016787
Tsu05g03253 320 PRINTS Serine/threonine phosphatase family signature 130 154 IPR006186 GO:0016787
Tsu05g03253 320 PRINTS Serine/threonine phosphatase family signature 164 190 IPR006186 GO:0016787
Tsu05g03253 320 PRINTS Serine/threonine phosphatase family signature 193 220 IPR006186 GO:0016787
Tsu05g03253 320 PRINTS Serine/threonine phosphatase family signature 250 270 IPR006186 GO:0016787
Tsu05g03253 320 PRINTS Serine/threonine phosphatase family signature 272 288 IPR006186 GO:0016787
Tsu05g03253 320 SMART pp2a_7 40 310 IPR006186 GO:0016787
Tsu05g03253 320 CDD MPP_PP1_PPKL 18 308 - -
Tsu05g03253 320 Pfam Calcineurin-like phosphoesterase 68 260 IPR004843 GO:0016787
Tsu05g03253 320 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 13 314 - -
Tsu05g03253 320 ProSitePatterns Serine/threonine specific protein phosphatases signature. 131 136 IPR006186 GO:0016787
Tsu05g03253 320 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 13 314 - -
Tsu05g03253 320 Pfam Serine-threonine protein phosphatase N-terminal domain 19 66 IPR031675 -
Tsu05g03253 320 SUPERFAMILY Metallo-dependent phosphatases 29 312 IPR029052 -
Tsu05g03253 320 Coils Coil 316 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03253 Tsu-Chr5 43830209 43835580 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03253 69 254 Calmodulin-binding Proteins AT5G63870 32.432 7.19e-26 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03253 K06269 - gmx:100811593 607.831