Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03237 ATGGCTGAGATTTGTTGTGGTGTTGTTGGAGCCGGGGAAACTCCGACTCCAACTATCGAACCAACTTCACGAAACTTCATTCGCCGGAGTTTGGATTTTCTTCCATTGAAATACATAGCTGACATGGCAATTCCGCCGGAAAATATTAGCCGGAAACGTCAGAAGCTAGATCCATCGTTTTCTCCTCCGTCACGTAAGAGCGAAAAAGGAGTTGACAGTTCTGAATCAGGCACGAATGAAAAATCTACGAAAAATGAAGTTGTCTTGGTTGCGAATCGTTCGAATGTTTCTGAGATAGAAAacgaggttgttgttgttgaagagtGTCCTAAATATGGAATAACATCGGTTtgtggaagaagaagagaaatggaAGATACTGTTTCGGTGCATCCATCGTTTTGTGAAGAAAAGACTGAACAAAAACAGAAACCGTTTCATTTCTTCAGTGTTTACGACGGTCATGGTTGTTCACATgtTGCAACTATGTGTAAACAAAGGTTACatgaaattgttgatgatgaaataaacaaagagaaagagaaagagagcgTTGACTGGAAGTCAACGATGGAGAAAAGTTTCATTCGCATGGATGAAGAGGTTTTGAATTCCACCAAGACTAAACAGAGTTTCACTTGTAAGTGTGAGCTTCAAACTCCTCACTGTGACGCCGTTGGTTCAACCGCAGTTGTTGCCGTTGTCACGCCGGAGAAAATCATTGTATCCAATTGTGGCGATTCTCGTGCTATTCTTTGCCGGAAAGGCGTCGCCATTCCTCTTTCCTCGGATCACAAGCCGGATCGACCCGATGAGTTGGATCGGATCAACTCCGCCGGAGGACGTGTGATCTATTGGGATGGTGCAAGAGTGCTTGGAGTATTGGCCATGTCAAGAGCCATAGGTGACAATTATTTGAAGCCGTATGTTATTTCGGAACCGGAGGTAACCGTAACGGAGAGGAGTGACGATGATGAGTGTTTGATACTAGCCAGTGATGGTTTATGGGACGTGGTGGAAAATGATACGGCTTGTAGGGTGGTGCAGATGTGTTTAAAGGCGGCGGAGAAGACGGTGTCACTACCGGGTTCACCAGGGAGTGTGGTGACGGGAGAGGGGTCAGATAAGGCGTGTTCTGATGCTTCAATTTTGTTGACGAAGTTGGCTTTGGCGAGGCATAGTTCGGACAATGTTAGCGTGGTGGTTGTTGATTTGAGGAGAGATCAGCGTCAacattaa 1239 0.4221 MAEICCGVVGAGETPTPTIEPTSRNFIRRSLDFLPLKYIADMAIPPENISRKRQKLDPSFSPPSRKSEKGVDSSESGTNEKSTKNEVVLVANRSNVSEIENEVVVVEECPKYGITSVCGRRREMEDTVSVHPSFCEEKTEQKQKPFHFFSVYDGHGCSHVATMCKQRLHEIVDDEINKEKEKESVDWKSTMEKSFIRMDEEVLNSTKTKQSFTCKCELQTPHCDAVGSTAVVAVVTPEKIIVSNCGDSRAILCRKGVAIPLSSDHKPDRPDELDRINSAGGRVIYWDGARVLGVLAMSRAIGDNYLKPYVISEPEVTVTERSDDDECLILASDGLWDVVENDTACRVVQMCLKAAEKTVSLPGSPGSVVTGEGSDKACSDASILLTKLALARHSSDNVSVVVVDLRRDQRQH 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03237 412 SUPERFAMILY PP2C-like 109 406 IPR036457 -
Tsu05g03237 412 ProSitePatterns PPM-type phosphatase domain signature. 148 156 IPR000222 GO:0043169
Tsu05g03237 412 ProSiteProfiles PPM-type phosphatase domain profile. 111 405 IPR001932 -
Tsu05g03237 412 CDD PP2Cc 111 361 IPR001932 -
Tsu05g03237 412 PANTHER ALPHABET, ISOFORM E-RELATED 34 410 - -
Tsu05g03237 412 Gene3D - 98 412 IPR036457 -
Tsu05g03237 412 MobiDBLite consensus disorder prediction 49 86 - -
Tsu05g03237 412 PANTHER PROTEIN PHOSPHATASE 2C-LIKE PROTEIN 34 410 - -
Tsu05g03237 412 Pfam Protein phosphatase 2C 111 397 IPR001932 -
Tsu05g03237 412 SMART PP2C_4 97 403 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03237 Tsu-Chr5 43667427 43669435 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03237 72 412 PP2C-type Phosphatase Gene Family AT1G07430 58.402 3.92e-148 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03237 K14497 - gmx:100776356 503.056
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01738 03 17728817 17730957 Tsu05g03237 05 43667427 43669435 ECH
Tsu05g03237 05 43667427 43669435 Tsu05g03237 05 43667427 43669435 ECH
Tsu03g01738 03 17728817 17730957 Tsu05g03237 05 43667427 43669435 PCT