Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03235 ATGACAGGGTTTGGCTCATCATGTGGAGCATGCAAATTCTTAAGGAGAAAGTGTGCTAGTGATTGTGTATTTGCTCCTTACTTTTCTTATGAGCAAGCTTCAACTCATTTTTCAGCTGTGCATAAGGTTTATGGTGCTAGTAATGTGTCAAGATTATTGTCACATCTTCCTATTCAAAATAGAAGTGATGCTGCGATCACTATATCTTATGAAGCCTTGGCTCGCATGCAAGATCCTATATATGGTTGTGTTGCTCATATCTATGCATTGCAACATCAGGTTGCAAGCTTGCAAGAGGAGATAGACATTCTTGGAAGTGTAATGGCAAATAGTTCAAGTGTTAGTGTTGTGAATTGTGGAAATCATGTCCAAGAACCAATGGACTCAAACAATGGAACACAATATTATCATAATCAAAGTTTTGAATCAAACATGGATATGGAGCTATTTCCAAATGCACATGGATTGGAAGAGCCTTTATATGGTGATTTTAACTCCAATCCATTAGAGAAATTCCTATCTGGAATTGATCAAGAGGGGTTCCTGAACCACCCTTGGTTTAAGCATAATGCAAACATGAAGAACTag 588 0.3759 MTGFGSSCGACKFLRRKCASDCVFAPYFSYEQASTHFSAVHKVYGASNVSRLLSHLPIQNRSDAAITISYEALARMQDPIYGCVAHIYALQHQVASLQEEIDILGSVMANSSSVSVVNCGNHVQEPMDSNNGTQYYHNQSFESNMDMELFPNAHGLEEPLYGDFNSNPLEKFLSGIDQEGFLNHPWFKHNANMKN 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03235 195 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Tsu05g03235 195 Pfam Lateral organ boundaries (LOB) domain 7 103 IPR004883 -
Tsu05g03235 195 PANTHER LOB DOMAIN-CONTAINING PROTEIN 33 1 194 - -
Tsu05g03235 195 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03235 Tsu-Chr5 43639376 43640517 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03235 1 188 AS2 family AT5G06080 50.265 9.39e-57 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tsu05g03235 LOB 2.6e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03235 K13945 - gmx:100809636 312.383