Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03234 ATGAAGAGAAGACAAGTTGAAGCACCAATAGAATCTTGGGAAGAAAAAGCTTTTGCAGAAGATGCAGCTAGGAATATACTTAATGGTAGCATATGGCCACCAAGATTTTATTCATGTAACTTTTGTAAAAGAGAGTTTAGGTCTGCTCAAGCTCTTGGTGGTCACATGAATATCCATAGGAGAGACAGAGCTAGGCTTAAACAAAATCTTAGCCCTCATAATGAAATTCAAAAGAATGATTTCATGTTTTCAACAAACTCATCACTAGGTAATCAttatttttctacaaaaatGTCATCTCAATTTAAACCTTGTTCTAGAAGAAGATCTCTTTCACCTTCTAGAATGATTTCAACTATAGTTAATGCAAGAGAAGAAAGTTTTAAGGATTGTGTTGAAACAAGTTTGTCTTTGGGTTCGGGATTGACTTCGATGTTTGGACAAAAATCATCGACTATTCTGTTGGGGAGTCTGGGGGAGCGTCAGAATCAACATCATGTTTCTTGTGAGGAAAAAGGTATGATCAGCTGTAAGAGATTGAAGACTAATAACATTTCTTCATTGCCTTCTGTTTTTCTCAAGACATGTTCAAATGATCATCATAAGTTCATGGATTTTCACCCTTCAGAAATTGTGCTTGGAATTAATCATGGAATGGATGATTTAGATCTTGAACTTAGGCTAGGGAAACAACATAAGGTTATTAAGTAg 711 0.3474 MKRRQVEAPIESWEEKAFAEDAARNILNGSIWPPRFYSCNFCKREFRSAQALGGHMNIHRRDRARLKQNLSPHNEIQKNDFMFSTNSSLGNHYFSTKMSSQFKPCSRRRSLSPSRMISTIVNAREESFKDCVETSLSLGSGLTSMFGQKSSTILLGSLGERQNQHHVSCEEKGMISCKRLKTNNISSLPSVFLKTCSNDHHKFMDFHPSEIVLGINHGMDDLDLELRLGKQHKVIK 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03234 236 Gene3D Classic Zinc Finger 33 89 - -
Tsu05g03234 236 PANTHER OS07G0101800 PROTEIN 11 235 - -
Tsu05g03234 236 ProSiteProfiles Zinc finger C2H2 type domain profile. 37 64 IPR013087 -
Tsu05g03234 236 SUPERFAMILY beta-beta-alpha zinc fingers 34 64 IPR036236 -
Tsu05g03234 236 ProSitePatterns Zinc finger C2H2 type domain signature. 39 59 IPR013087 -
Tsu05g03234 236 Pfam C2H2-type zinc finger 37 61 - -
Tsu05g03234 236 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 11 235 - -
Tsu05g03234 236 SMART c2h2final6 37 59 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03234 Tsu-Chr5 43627552 43628262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03234 12 68 C2H2 Transcription Factor Family AT2G37740 75.439 3.91e-25 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu05g03234 zf-C2H2_6 2.5e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03234 - - lja:Lj0g3v0352099.1 198.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g03234 05 43627552 43628262 Tsu05g03234 05 43627552 43628262 ECH
Tsu03g01727 03 17631710 17632680 Tsu05g03234 05 43627552 43628262 PCT