Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03232 ATGTCTTCCACTTCTGCCAACTCTGGTGCTACTATTCTGTATGACTACAATGTCTCTTCAAATAAGAAAAGCAAAAATTCTTCCAAGGCTTCATTCTTTAATGGTGGTTCCTCTTTATTATCATGGTGGAAGAGCATAATGTATAGTCATATTATGGGAATTGATAAAGATCTCTGGGATCTGATCACTAACACATCCACTGCTAAGAAAGTTTGCGATTCTCTTTGTGCTACCTATGAAGGAAATGAACAAGTCAAGGAAGCTAAAGTCAATGTGTCGGTTCAACGATTTGCTGATGTGTCATCATCTGATTGGTTCACCGTGCTCCATGCGTGTTTCCCTGCGCCTCAGGAGCAATCTGCTACACCTCAAGAGCAGTTGGCAGAAAGTCTCACCAAAACCGTTTTCTTCTGCGCCTCGTGCACAATATGCTGCGCCCAGGCACAATTGACAGTAACTTCAAGTCTTCTCTCTTTGATTCTACGCCTCAAGCGCCATTCATGCGCAGTTAGCAGGAACCAAATCCCCCTTTCTTCAGAAATTACGCACAATGCGTACCATCTGCGCCTTAGGCGTAGTTCCTACTCTCTTCAGAGTTATGAGCTAGAACTCATTGAAGATGAACCTGTCAAGAAGGCTAAGTTTTGTGCCTTGAAATCTATAGTCAAAACTAGCAAAGAATCTGAAGAAGAAACTGTGGATGGAAGAAAACCGCACACTATCTATAcacaaaaatacaaacattATCACTCTCAAAATCTCAATACCCCCATTTTCTTACCCTTTACACACAACTTCCAAAAAACACACTTCACAAGTTTTTCAAGaaagATGGCGAATTGGTGGGGAAATGGAAGGCCGACGGAGGTGAACCCGGTTGAAGGTTCGAACCAGAACGGTTCGAACCGTGTCGGGTTACGAATCGAACAAGATTTCGAAAACAACAACGGCAACGTTACTCCAACTTTGAGTAACAACAGCAACAGCAACACCGTTAACATTAACGGTAACGGAGAAGGTGAAAATAGCAGTGGCCGTGTAAGCAGCGGACAAAACACCGGAAGTGGCGGACGTCGTCCACGTGGACGTCCGCCTGGTTCAAAAAACAGGCCAAAACCGCCGGTTGTGATAACAAAAGAAACTCCAAACGCACTGCGTAGCCACATCTTGGAAGTTGCTGACGGAAACGACATCGTATCGTGTATTTCGAACTTTGCGAATCTCCGTCACCGTGGAGTTTCGATTCACAGCGGTTCCGGCGCTGTTAGCAATGTCACTATCCGGCAACCGTCTGCTCCTACCGGAATGATTGTTCTTCCTGGGAGATATGAGCTTGTTTCACTCTCCGGTGCTTTTTTGCCTCCGCCTTCGCCTCCATCGGCTACCGGACTGACAGTTTATCTCGTCGGAGCTCATGGACAGTTGATCGGAGGAACGGTCGTCGGGACTTTGGTTGCTTGTGGACCTGTTATGATTGTTGCTGCTACTTTTGCTAATGCTACTTATGAAAGATTACCATTAGTAATGGAAGAGGAACAAGAAGCAAATATGCAAGAGATTAATAACACTAATCATGTTATTAATAATACCATTGGTATTAATggtattattaataatcataaCAATGACGGTGGTTCAGGTTCTGGTTCTGGTGCTTCTGGCTCAGCAAGTGGTAGCGGTGGCGCAACTTCTCATCATGGATTAGGTGATTACAATTTGAATCCAAGTTTGCTGCAGAatgctggtggtggtggtggacaTGCCGTGGCACATGATGTGTTCTGGCGTCCACCAGGGTATTGA 1803 0.4359 MSSTSANSGATILYDYNVSSNKKSKNSSKASFFNGGSSLLSWWKSIMYSHIMGIDKDLWDLITNTSTAKKVCDSLCATYEGNEQVKEAKVNVSVQRFADVSSSDWFTVLHACFPAPQEQSATPQEQLAESLTKTVFFCASCTICCAQAQLTVTSSLLSLILRLKRHSCAVSRNQIPLSSEITHNAYHLRLRRSSYSLQSYELELIEDEPVKKAKFCALKSIVKTSKESEEETVDGRKPHTIYTQKYKHYHSQNLNTPIFLPFTHNFQKTHFTSFSRKMANWWGNGRPTEVNPVEGSNQNGSNRVGLRIEQDFENNNGNVTPTLSNNSNSNTVNINGNGEGENSSGRVSSGQNTGSGGRRPRGRPPGSKNRPKPPVVITKETPNALRSHILEVADGNDIVSCISNFANLRHRGVSIHSGSGAVSNVTIRQPSAPTGMIVLPGRYELVSLSGAFLPPPSPPSATGLTVYLVGAHGQLIGGTVVGTLVACGPVMIVAATFANATYERLPLVMEEEQEANMQEINNTNHVINNTIGINGIINNHNNDGGSGSGSGASGSASGSGGATSHHGLGDYNLNPSLLQNAGGGGGHAVAHDVFWRPPGY 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03232 600 MobiDBLite consensus disorder prediction 313 356 - -
Tsu05g03232 600 Pfam Plants and Prokaryotes Conserved (PCC) domain 386 498 IPR005175 -
Tsu05g03232 600 SUPERFAMILY AF0104/ALDC/Ptd012-like 383 506 - -
Tsu05g03232 600 MobiDBLite consensus disorder prediction 542 563 - -
Tsu05g03232 600 MobiDBLite consensus disorder prediction 313 382 - -
Tsu05g03232 600 MobiDBLite consensus disorder prediction 542 562 - -
Tsu05g03232 600 ProSiteProfiles PPC domain profile profile. 382 521 IPR005175 -
Tsu05g03232 600 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 295 598 - -
Tsu05g03232 600 Gene3D - 385 524 - -
Tsu05g03232 600 CDD DUF296 386 497 IPR005175 -
Tsu05g03232 600 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 295 598 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03232 Tsu-Chr5 43594117 43601993 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03232 358 514 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 61.783 1.75e-56 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03232 - - cam:101507777 316.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g03232 05 43594117 43601993 Tsu05g03232 05 43594117 43601993 ECH
Tsu03g01720 03 17553451 17554735 Tsu05g03232 05 43594117 43601993 PCT