Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03227 ATGTCTTCGCATTGGTGTTACCGGTGTAACAAATTTGTTAGGGTATGGAGGCTAGGGATGCCAATATGTTTAGATTGTGACAGCGGCTTTGTTGAAGACCTCGAACAATCCAGACGTGCTCGCAATGCGGAAGGTGGTCCTCAAAGGAGGTTCCCTATGTCAGCCGCTATGTACATGATGGGCCACAACAATAACAATTCTAATCAATATGCTCGTAGACGCCGTTGCAGAAACAACATTAACGAAGATTATAACATTTCTGACCCAATCATCATGATCCGTGGTAACAGATCATCTGGTGGTATGGCCCGTGAGGGCGAAGGGAATCGTGGGTTTGAACTTTTCTACGAAGATGGTGCCGGTTCCGGTCTCCGACCATTGCCTCCAAGGATGTCAGATTTTCTTCTTGGATCTGGATTTGAAAGGGTGATGGAAAACCTTTCTCATGTCGAAGCTAATCGAAATAGAAATGATCGacataatcaacaacaattacCGGCATCAAAATCCGCTGTGGAAATGTTACCAATTATTGAAATTAATCAAACTCATATGGAGATAGAATCACATTGCGCTGTTTGCAAAGAGATGTTTGAACTTGGCATTGTGGCAAGAGAAATGCCATGCAAACACATATACCATGATGAATGCATACTTCCATGGCTTGCAATTAAAAATTCTTGTCCGGTATGTCGCCATGAACTTCCTTGTGAAACACCacaaaataacaataatcaAAATTTAGACGAGAACATTGGGTTGACGATTTATCGTTTACCGGGTGGAGGGTTTGCCGTGGGAAGATTCTCCGGTGGAAGAAACGGAGTTGCGGGCGGGGATGAAAATGAAAGAGACCTTCCTATTGTTTACACAGAAATGGATGGTGCATTTAACAATATTGGTGAACCAAGGAGAATTTCATGGTCATTAACATCAACTAGAGGAAGGAGAGGAAGACATAATGGGGGTGGATTTCGTAGAATGATGAACAATTTGTTTGGATGTTTGGGAGGTGGGGGTGAAGGTAGCAATAATATTCAAAGTTCTCTTCCTACTACTAGAGAGTTTTCTCAATCTATGACAACCATGAGAAATAATAGTGCATCTAATAGTACCAATGAGAGTTCTTCTCCACGTTCACGTAGAACTTGGTCTATGGATGTAAATGGTGGAATGAGACAATGGTAA 1188 0.4116 MSSHWCYRCNKFVRVWRLGMPICLDCDSGFVEDLEQSRRARNAEGGPQRRFPMSAAMYMMGHNNNNSNQYARRRRCRNNINEDYNISDPIIMIRGNRSSGGMAREGEGNRGFELFYEDGAGSGLRPLPPRMSDFLLGSGFERVMENLSHVEANRNRNDRHNQQQLPASKSAVEMLPIIEINQTHMEIESHCAVCKEMFELGIVAREMPCKHIYHDECILPWLAIKNSCPVCRHELPCETPQNNNNQNLDENIGLTIYRLPGGGFAVGRFSGGRNGVAGGDENERDLPIVYTEMDGAFNNIGEPRRISWSLTSTRGRRGRHNGGGFRRMMNNLFGCLGGGGEGSNNIQSSLPTTREFSQSMTTMRNNSASNSTNESSSPRSRRTWSMDVNGGMRQW 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03227 395 ProSiteProfiles Zinc finger RING-type profile. 191 232 IPR001841 -
Tsu05g03227 395 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE PROTEIN 2 331 - -
Tsu05g03227 395 MobiDBLite consensus disorder prediction 344 395 - -
Tsu05g03227 395 CDD RING-H2_RNF126_like 191 232 - -
Tsu05g03227 395 SUPERFAMILY RING/U-box 175 241 - -
Tsu05g03227 395 Pfam Protein of unknown function (DUF1117) 252 366 IPR010543 -
Tsu05g03227 395 Pfam zinc-ribbon 3 34 IPR039525 GO:0061630
Tsu05g03227 395 Pfam Ring finger domain 190 232 IPR001841 -
Tsu05g03227 395 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 238 IPR013083 -
Tsu05g03227 395 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 331 - -
Tsu05g03227 395 SMART ring_2 191 231 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03227 Tsu-Chr5 43512954 43514141 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03227 124 238 C3H Transcription Factor Family AT5G01980 37.391 1.03e-20 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03227 - K11982 gmx:100789228 403.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g00581 03 4981443 4983017 Tsu05g03227 05 43512954 43514141 ECH
Tsu05g03227 05 43512954 43514141 Tsu05g03227 05 43512954 43514141 ECH