Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03216 ATGACTAAGATCAACATCACCACCATTCTCACCCTCTTAACCTTTCTCCTCACATCAACCGAAGCCAGAGTCCCTGGCATCTACACCGGGGGAGCATGGCAAACCGCTCACGCCACCTTCTACGGTGGTAGCGACGCCTCCGGAACAATGGGTGGCGCGTGCGGATACGGAAATTTGTATAGTCAAGGATACGGTGTGAACACCGCAGCCTTGAGCACTGCACTTTTTAACAACGGTTTAAGTTGTGGTGCTTGTTTTGAGCTAAAATGTGCTAATGACCCAACTTGGTGTCACCCTGGTAGTCCTTCAATATTGGTAACTGCTACAAATTTTTGTCCACCAAATTATGCTCAAGCAAGTGATAACGGAGGATGGTGCAATCCTCCAAGACCACACTTTGATCTTGCTATGCCTATGTTTCTTAAAATTGCTCAATATCTTGCCGGCATTGTTCCTGTTTCTTACCGCCGTGTATCATGTAGAAAACAAGGAGGAATAAGATTCACAATCAACGGTTTCCGTTACTTCAACTTGGTATTAATCACCAACGTTGCGGGTGCAGGGGATATCGTGAAGACTAGTGTTAAAGGTTCAAAAAGTGGTTGGATGAGTATGAGTCGTAATTGGGGGCAAAATTGGCAATCAAATGTTGTTTTGGTTGGTCAGTCACTTTCTTTTAGGGTCACAGCCAGTGACCGACgcacttccacttcttggaataTTGTTCCTTCTAATTGGCAATTTGGTCAAACTTTCATTGGCAAGAATTTtcgcgtttga 780 0.4295 MTKINITTILTLLTFLLTSTEARVPGIYTGGAWQTAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCANDPTWCHPGSPSILVTATNFCPPNYAQASDNGGWCNPPRPHFDLAMPMFLKIAQYLAGIVPVSYRRVSCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKTSVKGSKSGWMSMSRNWGQNWQSNVVLVGQSLSFRVTASDRRTSTSWNIVPSNWQFGQTFIGKNFRV 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03216 259 SUPERFAMILY Barwin-like endoglucanases 13 183 IPR036908 -
Tsu05g03216 259 Pfam Lytic transglycolase 68 155 IPR009009 -
Tsu05g03216 259 Gene3D - 20 161 IPR036908 -
Tsu05g03216 259 Pfam Expansin C-terminal domain 166 243 IPR007117 -
Tsu05g03216 259 SMART dpbb_1 68 155 IPR007112 -
Tsu05g03216 259 PRINTS Expansin/Lol pI family signature 240 254 IPR007118 GO:0005576
Tsu05g03216 259 PRINTS Expansin/Lol pI family signature 202 216 IPR007118 GO:0005576
Tsu05g03216 259 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576
Tsu05g03216 259 PRINTS Expansin/Lol pI family signature 148 164 IPR007118 GO:0005576
Tsu05g03216 259 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576
Tsu05g03216 259 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576
Tsu05g03216 259 Gene3D - 165 257 IPR036749 -
Tsu05g03216 259 SUPERFAMILY PHL pollen allergen 162 253 IPR036749 -
Tsu05g03216 259 PANTHER EXPANSIN-A4 8 258 - -
Tsu05g03216 259 PANTHER EXPANSIN-A15 8 258 IPR002963 GO:0009664
Tsu05g03216 259 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 165 IPR007112 -
Tsu05g03216 259 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 175 254 IPR007117 -
Tsu05g03216 259 PRINTS Expansin signature 211 232 IPR002963 GO:0009664
Tsu05g03216 259 PRINTS Expansin signature 140 153 IPR002963 GO:0009664
Tsu05g03216 259 PRINTS Expansin signature 240 256 IPR002963 GO:0009664
Tsu05g03216 259 PRINTS Expansin signature 176 197 IPR002963 GO:0009664
Tsu05g03216 259 PRINTS Expansin signature 164 176 IPR002963 GO:0009664
Tsu05g03216 259 PRINTS Expansin signature 104 114 IPR002963 GO:0009664
Tsu05g03216 259 PRINTS Expansin signature 123 140 IPR002963 GO:0009664
Tsu05g03216 259 PRINTS Expansin signature 63 77 IPR002963 GO:0009664
Tsu05g03216 259 PRINTS Expansin signature 90 101 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03216 Tsu-Chr5 43352150 43354364 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03216 6 259 Expansin Gene Family AT2G39700 85.098 9.48e-166 457
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03216 - - gmx:100803242 488.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g01147 04 11370746 11374127 Tsu05g03216 05 43352150 43354364 ECH
Tsu02g05201 02 60988116 60990198 Tsu05g03216 05 43352150 43354364 ECH
Tsu02g02100 02 20600452 20603806 Tsu05g03216 05 43352150 43354364 ECH
Tsu05g03216 05 43352150 43354364 Tsu05g03216 05 43352150 43354364 ECH