Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03213 ATGAGACTACTACTTGCTCCCTTGTGCCTTCTATTCTTATTCTTGCATTTGTATTCTGTTTCTGCACTAAACTCAGATGGATTGGCACTCTTATCATTCATGTCTCATTGGACATTTGTTCCTCCTCGGATAAACTCCAGATGGATTCCATCTGATTCCACACCATGTTCATGGGAGGGTGTCCAATGCGATGCTGCAACCCACCGTGTAGTCTCTCTCAACCTTTCCTATTATGACATTCCCGGTCAACTAGGACCTGAGATTGCTAATTGCACACAACTCAAAAACTTAGACCTTTCTTATAACTACTTTACCGGCCAAATACCTCACTCATTCAATAATCTTCACAAACTCACCTTTTTCGATCTCTCTATTAATCTTCTAAACGGTTCCATTCCAGCTAGTATTGGCAACATGACTCAACTTCGTTACTTGTATCTCCAAAATAATACCTTGTCTGGTACAATTCCTTCAACCATTGGAAACTGCACTCAACTACAAGACTTGTTTTTGAACTCTAATCAGTTCCAGGGTGTCATTCCCCACACTCTCAATACCAATCTTCTTCGTTTTGATGTTGCCAATAATAAACTAACAGGCACCATTCCATTTGGTGGCTCTTCTGGTTGTCAAAATTTACTGTTTTTGGATATCTCAATGAATTTCTTTAGTGGAGGCATTCCCTCAACCATTGGGAATTGTACTTCTTTATCACAATTTGTTGCTGTCCAATGTAACTTGGTTGGAACTATTCCATCCTCTATCGGTCTTCTCACCAAGCTTTCAATTCTACTCCTTCCTGACAATCATTTGTCCGGAAAAATACCTCCCGAAATAGGTAACTGCAAGTCTTTGAAGCATTTGTACTTGTATTCCAATCGACTTGATGGAAACATTCCAACTGAATTGGAGAAGCTGAGTGAACTGAAGAACCTTGAGCTGTTTGCAAATCAATTGCACGGGGAAATTCCACATGGCATATGGAAGATTCAAAGTCTTGAACATCTAATTGTGTATAATAATAGCCTTTCGGGTGAACTTCCCGTGGAGATGACAGAGCTCAAGAATCTCAAAAACATCTCATTGTTTAACAACATGTTCTCTGGAGTCATACCTCAAAGCTTAGGAATTAATAGCACTTTATTGCTGTTGGACTTTACAAATAACAGGCTCACTGGCAACCTCCCACCAAATCTTTGTTTTGGCAGaaatttaagaattttgaatATGGGGATCAATCAACTTCAAGGTACCATACCTCGTGATGTCGGAAGATGCACAACTCTAACTAGGGTCATTCTTAAACAAAACAACTTTGTTGGGCCTCTACCTGATTTTGAAACCAATACCGATCTCTTATACATGGATATcaccaacaacaaaatcaacggTTCGATTCCATCAAGTTTAGGAAACTGCAAAAATCTCACAGATTTGATTTTGTCCACGAACAAATTTAGCGGCCCAATACCATCAGAGATAGGAAACCTTGTGAATCTTCGGACTTTGGTTCTTGCTCACAACAACTTAGAAGGTTCTTTGCCATTTCAGCTGTCAAACTGTACCAAAATGGACAAGTTTGACGTGggatttaatttcttaaatggTTCTTTGCCATCAAGTTTACAGAGATGGACAAGGCTAAAGACACTAATTTTGAGTGAGAATCGTTTTAGTGGCGGCATTCCAACTTACTTGTTGTACGATCTTTTAGAACTACAGCTTGGTGGCAATATGTTTGGAGGGAGGATTCCTAGATCGGTTGGGGCATTGCAGAATTTGATCTATGGGTTAAATCTAAGTTCTAATCGACTGATAGGAGACATACCTGTGGAAATTGGAAAACTGAAAAATTTGCAAATGATGGATCTGTCTTGGAACAATTTGACAGGAAGCATACAAGTTCTTGATGAACTCCCTTCATTGGTTCAAATCAATATTTCATATAATTCTTTTCAGGGTCTCATACCAAAGAGTCTAATGAAGCTGCTTAGTTCTCCTTGGTCATCATTTTTGGGGAATCTTGGGCTATGTATCAGTTGTTCACCATCTGATGGTTTGGTTTGCACCAAAAGCAGCAGCCATCTAAAACCATGTGATAACAAAACAGTGAAACACAAAGGCCCCAACAAAACTGCAATTGTGATGATAGCTTTAGGATCCtcaatatttgttgtttttctgTTGATGGGATTAGTATATATCTTTGTTTATGGCAGAAAATCTAAGCTGCAAGTCCATATTACTGATAATGGTGGTCCTTCGTCCCTTTTTAACGAAGTCCTGAAGGCTACATCAAACCTAAGTGATGAGTATATTATTGGCAGGGGAGCCCATGGAGTTGTTTATAAAGCCCTTGTAAGTCAAGACAAAGTTTTTGCTGTAAAGAAGCTAGCATTTGCTGCCAACAAAGGTAAGAAAATGAGCATGGTCAGAGAAATTCAAACACTTGGACATGTTAAGCATCGAAATCTTGTCAAATTGGAAGAGTTTTGGTTCAGACAAGATTATGGTCTAATTATGTATAGTTACATGCCAAATGGAAGCCTTTATGATGTATTGCATGTAAAGAAACCAGCACCATATTTAGAATGGAATGTCCGGTATAAAATAGCTGTTGGAATTGCTCATGGGTTGGCTTATCTCCATTATGACTGTGATCCTCCCATATTGCACCGAGATATCAAACCAAACAACATACTTTTAGACTCTGATATGGAGCCTCACATTGCTGACTTTGGTATTGCCAAACTTTTGGACCAGTCTTCTACATCAAATCCTTCCTTATCTGTGCCGGGCACAATTGGTTATATTGCGCCagAGAATGCTTATACAACAAGAAGTAGTAGGGAGTGTGACGTGTACAGTTATGGGGTAGTTTTGCTTGAGCTGATAACCAGAAAGAAGGTGGCAGATCCATTATTTATGGAGGGTACTACTGGTATAGTGGGTTGGACTAGATTGTTGTGGAGTGAAACAGAAGAAATTAACCAAATTGTTGATTCAAGCCTTGCAAATGAATGTGTAGATACCAATATAATGGAAAATGTTACCAAAGTGCTTATGCTGGCTTTGAGATGTACTGAGAAGAATCCACACAAGAGGCCCACAATGAGAGATGTTACCAAGCAATTATCAGATTCTAATCCACAGAAAATAAGTAGAAACTGCAGATATGTAAATCCATATCAACATTACGCGTCAAAGtga 3210 0.3819 MRLLLAPLCLLFLFLHLYSVSALNSDGLALLSFMSHWTFVPPRINSRWIPSDSTPCSWEGVQCDAATHRVVSLNLSYYDIPGQLGPEIANCTQLKNLDLSYNYFTGQIPHSFNNLHKLTFFDLSINLLNGSIPASIGNMTQLRYLYLQNNTLSGTIPSTIGNCTQLQDLFLNSNQFQGVIPHTLNTNLLRFDVANNKLTGTIPFGGSSGCQNLLFLDISMNFFSGGIPSTIGNCTSLSQFVAVQCNLVGTIPSSIGLLTKLSILLLPDNHLSGKIPPEIGNCKSLKHLYLYSNRLDGNIPTELEKLSELKNLELFANQLHGEIPHGIWKIQSLEHLIVYNNSLSGELPVEMTELKNLKNISLFNNMFSGVIPQSLGINSTLLLLDFTNNRLTGNLPPNLCFGRNLRILNMGINQLQGTIPRDVGRCTTLTRVILKQNNFVGPLPDFETNTDLLYMDITNNKINGSIPSSLGNCKNLTDLILSTNKFSGPIPSEIGNLVNLRTLVLAHNNLEGSLPFQLSNCTKMDKFDVGFNFLNGSLPSSLQRWTRLKTLILSENRFSGGIPTYLLYDLLELQLGGNMFGGRIPRSVGALQNLIYGLNLSSNRLIGDIPVEIGKLKNLQMMDLSWNNLTGSIQVLDELPSLVQINISYNSFQGLIPKSLMKLLSSPWSSFLGNLGLCISCSPSDGLVCTKSSSHLKPCDNKTVKHKGPNKTAIVMIALGSSIFVVFLLMGLVYIFVYGRKSKLQVHITDNGGPSSLFNEVLKATSNLSDEYIIGRGAHGVVYKALVSQDKVFAVKKLAFAANKGKKMSMVREIQTLGHVKHRNLVKLEEFWFRQDYGLIMYSYMPNGSLYDVLHVKKPAPYLEWNVRYKIAVGIAHGLAYLHYDCDPPILHRDIKPNNILLDSDMEPHIADFGIAKLLDQSSTSNPSLSVPGTIGYIAPENAYTTRSSRECDVYSYGVVLLELITRKKVADPLFMEGTTGIVGWTRLLWSETEEINQIVDSSLANECVDTNIMENVTKVLMLALRCTEKNPHKRPTMRDVTKQLSDSNPQKISRNCRYVNPYQHYASK 1069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03213 1069 SMART LRR_typ_2 139 163 IPR003591 -
Tsu05g03213 1069 SMART LRR_typ_2 616 639 IPR003591 -
Tsu05g03213 1069 SMART LRR_typ_2 497 521 IPR003591 -
Tsu05g03213 1069 SMART LRR_typ_2 258 282 IPR003591 -
Tsu05g03213 1069 SMART LRR_typ_2 306 330 IPR003591 -
Tsu05g03213 1069 ProSiteProfiles Protein kinase domain profile. 768 1052 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g03213 1069 ProSitePatterns Serine/Threonine protein kinases active-site signature. 890 902 IPR008271 GO:0004672|GO:0006468
Tsu05g03213 1069 Gene3D Ribonuclease Inhibitor 278 357 IPR032675 -
Tsu05g03213 1069 Gene3D Transferase(Phosphotransferase) domain 1 845 1062 - -
Tsu05g03213 1069 SUPERFAMILY Protein kinase-like (PK-like) 751 1045 IPR011009 -
Tsu05g03213 1069 SUPERFAMILY L domain-like 48 396 - -
Tsu05g03213 1069 SMART serkin_6 768 1052 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g03213 1069 PANTHER OS08G0446200 PROTEIN 10 157 - -
Tsu05g03213 1069 PANTHER OS08G0446200 PROTEIN 245 1052 - -
Tsu05g03213 1069 Pfam Leucine rich repeat N-terminal domain 24 64 IPR013210 -
Tsu05g03213 1069 Pfam Protein kinase domain 771 1043 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g03213 1069 PANTHER OS08G0446200 PROTEIN 142 252 - -
Tsu05g03213 1069 Gene3D Ribonuclease Inhibitor 23 185 IPR032675 -
Tsu05g03213 1069 Gene3D Ribonuclease Inhibitor 358 685 IPR032675 -
Tsu05g03213 1069 Gene3D Ribonuclease Inhibitor 186 277 IPR032675 -
Tsu05g03213 1069 Gene3D Phosphorylase Kinase; domain 1 742 844 - -
Tsu05g03213 1069 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 10 157 - -
Tsu05g03213 1069 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 245 1052 - -
Tsu05g03213 1069 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 142 252 - -
Tsu05g03213 1069 ProSiteProfiles Leucine-rich repeat profile. 618 640 IPR001611 GO:0005515
Tsu05g03213 1069 Pfam Leucine rich repeat 598 651 IPR001611 GO:0005515
Tsu05g03213 1069 Pfam Leucine rich repeat 93 152 IPR001611 GO:0005515
Tsu05g03213 1069 SUPERFAMILY RNI-like 369 667 - -
Tsu05g03213 1069 ProSitePatterns Protein kinases ATP-binding region signature. 774 797 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03213 Tsu-Chr5 43315483 43318778 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03213 16 1057 Receptor kinase-like Gene Family AT1G73080 48.778 0.0 962
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Tsu05g03213 Pkinase 7.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03213 - - gmx:100778035 1445.25