Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03204 ATGGTGATTGGCTTCACGGatctttctttctctctaatCACTCAATCAAGgGTTAGGTTAAAAATGCGGAGGAACAGTCCAGGTGGTTACTACAGTCCTCCCCGGAGAGGATACGGCGGAAGAGGACCTAGTAGGAGAGGAGGAtacggtggtggtggtggtggaggtggAGGTAGGCGTAGAGAAAGCAACAATGGAAGTCTTTTGGTTCGGAACATTCCTTTAGATTGTAGACCTGAGGAACTTAGAGCACCGTTCGAGCGATTTGGACCGGTTCGTGATGTTTACATACCGAAAGATTATTACTCTGGACAACCTCGAGGCTTTGCATTCGTGCAGTTTGTGGATTCGTATGAGGCCTCCGAGGCGCAGTACCATATGGACAGACAAATTTTTGCTGGAAGGGAAATATCTGTAGTTGTGGCGGCAGAGACAAGAAAAAGGCCAGAGGAGATGCGCCACAGGACTAGTAGATccagAGGACCAGGGAGCTATGGGGGGCAAAGATCTTCCTACCATGGGCGTTCTCGATCTCGTTCAATTTCCAGATCAAGATCACCTCCTTATCACTCTGGTTCTAGAAGCCGATATCGCTCAAGGTCCAGGTCATTCTCTCCTCCCCCAAGACGGCAAGGTCGTATTCTCCAGGCTATGGCAATGGTGCTGATCAGAATCAAAGCAATGGATATGCAGAGAAATCTATGTACAAATCTGAGGCTGATCGAGGCCAGTGGAAGTCATCGGCACAAAGAACATCAAGATCACCCCCTGGATCTAGATCTAGATCAAGATCTGTTGATTTGTCTCCTAGACGTGGAAGATGAGGTTGCATTGCAGGTTTGTTGGCAATGCGCTACTGGGCTATGTACAATTTCTTTGATTTACCAGAACATTTACAAAAACCTGTAG 909 0.4488 MVIGFTDLSFSLITQSRVRLKMRRNSPGGYYSPPRRGYGGRGPSRRGGYGGGGGGGGGRRRESNNGSLLVRNIPLDCRPEELRAPFERFGPVRDVYIPKDYYSGQPRGFAFVQFVDSYEASEAQYHMDRQIFAGREISVVVAAETRKRPEEMRHRTSRSRGPGSYGGQRSSYHGRSRSRSISRSRSPPYHSGSRSRYRSRSRSFSPPPRRQGRILQAMAMVLIRIKAMDMQRNLCTNLRLIEASGSHRHKEHQDHPLDLDLDQDLLICLLDVEDEVALQVCWQCATGLCTISLIYQNIYKNL 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03204 302 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 66 144 IPR000504 GO:0003723
Tsu05g03204 302 MobiDBLite consensus disorder prediction 24 67 - -
Tsu05g03204 302 MobiDBLite consensus disorder prediction 161 206 - -
Tsu05g03204 302 SUPERFAMILY RNA-binding domain, RBD 62 172 IPR035979 GO:0003676
Tsu05g03204 302 SMART rrm1_1 67 140 IPR000504 GO:0003723
Tsu05g03204 302 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 68 137 IPR000504 GO:0003723
Tsu05g03204 302 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 54 250 - -
Tsu05g03204 302 MobiDBLite consensus disorder prediction 145 210 - -
Tsu05g03204 302 Gene3D - 58 213 IPR012677 -
Tsu05g03204 302 PANTHER SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL30 54 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03204 Tsu-Chr5 43234972 43238950 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03204 43 123 Eukaryotic Initiation Factors Gene Family AT3G11400 39.506 2.06e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03204 K12900 - gmx:100792397 198.364