Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03202 ATGAAGAGCTTCACTTTTAGTGAGCTAAAAACTGCTACAAGGAACTTTCGTCCTGATAGTGTGGTTGGTGAAGGTGGGTTTGGAGCTGTATTTAAAGGGTGGATTGATGAGCACTCGCTTGTGCCGGTTAGACCGGGGACTGGAGTTGTCATTGCTGTCAAAAAGCTTAACCAAGAAGGTTTACAAGGACACAGCGAATGGTTGACAGAAATCAATTACCTGGGACAGCTGCATCATCCTAATCTTGTGAAACTGATTGGTTACTGCTTCGAAGACGACCACCGGCTTTTGGTATACGAGTTTTTGGCCAAGGGCAGTTTGGACAACCATTTATTTAGAAGAGCTTCTTACTTTCAACCGCTTTCTTGGACCATCCGAATGAAGGTTGCTCTTGATGCTGCTAAAGGTCTTGCATATCTTCACAGTGATGAAGCAAAAGTGATATACCGAGACttcaaaacttcaaatatattgCTCGACTCGAGTTATAATGCAAAACTTTCCGATTTTGGCTTGGCAAAGGACGGACCAGCAGGTGATTCGAGTCATGTCTCTACAAGGGTAATGGGCACATATGGCTATGCCGCACCTGAATATATGGCAACAGGTCATTTGACTAAAAAGAGCGATGTGTATAGCTTCGGCGTTGTGCTCCTTGAAATTATGTCAGGCAAACGAGCACTCGACACCAACAGACCATCTGGGGAACACAATTTAATTGAATGGGCCAAACCGTACCTCAACAGCAAACGCCGGATCTTCCAAGTTATGGACGCTCGCATCGAAGGCCAATACTCGTTGCGTCAAGCAGTGAAAGCAGCTAACCTCGCGGTTCAATGCTTGTCCGTTGAACCAAGATTTAGACCGAAAATGGACGAGGTTGTAAGAGCATTAGAGGAACTTCAGGGTTCCTCAGATGACCTGACCGGAAGAGTAGGAAGCTCTCGAGATCAAAATATTAGGAGTGTTCCTAGCTCGAGGAGTAATGGTCCTCGACAACAGAGAAGTAATAAACCAAGtgaaacaataaataaatga 1038 0.4393 MKSFTFSELKTATRNFRPDSVVGEGGFGAVFKGWIDEHSLVPVRPGTGVVIAVKKLNQEGLQGHSEWLTEINYLGQLHHPNLVKLIGYCFEDDHRLLVYEFLAKGSLDNHLFRRASYFQPLSWTIRMKVALDAAKGLAYLHSDEAKVIYRDFKTSNILLDSSYNAKLSDFGLAKDGPAGDSSHVSTRVMGTYGYAAPEYMATGHLTKKSDVYSFGVVLLEIMSGKRALDTNRPSGEHNLIEWAKPYLNSKRRIFQVMDARIEGQYSLRQAVKAANLAVQCLSVEPRFRPKMDEVVRALEELQGSSDDLTGRVGSSRDQNIRSVPSSRSNGPRQQRSNKPSETINK 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03202 345 ProSitePatterns Protein kinases ATP-binding region signature. 22 55 IPR017441 GO:0005524
Tsu05g03202 345 Pfam Protein tyrosine and serine/threonine kinase 20 298 IPR001245 GO:0004672|GO:0006468
Tsu05g03202 345 Gene3D Phosphorylase Kinase; domain 1 1 101 - -
Tsu05g03202 345 ProSitePatterns Serine/Threonine protein kinases active-site signature. 147 159 IPR008271 GO:0004672|GO:0006468
Tsu05g03202 345 CDD STKc_IRAK 22 301 - -
Tsu05g03202 345 SUPERFAMILY Protein kinase-like (PK-like) 3 299 IPR011009 -
Tsu05g03202 345 PANTHER KINASE 1B 1 339 - -
Tsu05g03202 345 MobiDBLite consensus disorder prediction 305 345 - -
Tsu05g03202 345 MobiDBLite consensus disorder prediction 307 345 - -
Tsu05g03202 345 PANTHER OS01G0588500 PROTEIN-RELATED 1 339 - -
Tsu05g03202 345 ProSiteProfiles Protein kinase domain profile. 16 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g03202 345 Gene3D Transferase(Phosphotransferase) domain 1 102 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03202 Tsu-Chr5 43222541 43224796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03202 2 324 Glycoside Hydrolase AT3G07070 49.846 1.54e-107 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Tsu05g03202 PK_Tyr_Ser-Thr 3.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03202 - - gmx:100800735 595.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g03202 05 43222541 43224796 Tsu05g03202 05 43222541 43224796 ECH
Tsu03g00591 03 5129610 5132606 Tsu05g03202 05 43222541 43224796 PCT