Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03198 ATGAAAACTCTCTTCTCATCTAACAAAAGTTGTGGTTGCATTAAATTAAAACCCTCTAATATCATTCAACCCActcaaaaaccaaaaatatccatttaccaaaataaaaaccctaaaaagatCACTTCCTCCACCACCACTTCATGCGACGGCAACACCGGCGATGAAGATTATACATCTACTACAATCTTGAACAATAACTATAGTATTTTAAAACCGGGTACAAAACTCGTCAATAGTGTTGCCATTGAGAAGGAGTCGAACGAGCCATACGAAGATTTTCGAAGTTCTATACTTCAAATGATATTGGAGAGAGATATTTATTCTGAAAAAGATCTACAAGAACTTCTTGAATGTTTTCTTCAGCTTAATGCAAAGTGTCACCACCATGTCATTGTTGAAGCTTTCATGGAGATTTGTGAAAAAATATTCCCTAAGAAGGTTTGTGGTGATGGTAGAGACGTGTGA 468 0.3312 MKTLFSSNKSCGCIKLKPSNIIQPTQKPKISIYQNKNPKKITSSTTTSCDGNTGDEDYTSTTILNNNYSILKPGTKLVNSVAIEKESNEPYEDFRSSILQMILERDIYSEKDLQELLECFLQLNAKCHHHVIVEAFMEICEKIFPKKVCGDGRDV 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03198 155 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 81 142 IPR006458 -
Tsu05g03198 155 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 2 153 IPR038933 GO:0045892
Tsu05g03198 155 PANTHER OVATE TRANSCRIPTIONAL REPRESSOR 2 153 - -
Tsu05g03198 155 Pfam Transcriptional repressor, ovate 87 144 IPR006458 -
Tsu05g03198 155 ProSiteProfiles OVATE domain profile. 83 142 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03198 Tsu-Chr5 43189239 43189706 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Tsu05g03198 Ovate 7.6e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03198 - - mtr:MTR_5g079710 248.054