Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03196 ATGAGAACACCTTGTTGTGACAAAGAAAACATCAACAAAGGTGCTTGGTCTAAGCAAGAAGATCAAAAACTCATTGACTATATACAAGTTCATGGTGAAGGATGTTGGGGATCCATCCCTAAGGCTGCTGCAGGGTTGCACCGTTGTGGCAAAAGTTGTAGACTAAGATGGTTAAACTATTTACGACCAGACATCAAACGTGGAATCTTTGCTCAAGATGAAGAAGACCTCATTATCAAACTCCATGCCCTCCTTGGCAATCGGTGGGCACTCATAGCTGGAAGGTTACCAGGACGTACAGATAATGAAGTGAAGAACCATTGGAATTCTCATATTCGTAGAAAGCTAATAAAAATGGGAATTGATCCAAATAATCATAAGCTACACAAAGAAAAGATTATGGGACTgGCCTATCGACACATCATGGCAGTGAGGGCATATATAGGTGGAGGCGGGGGTCTTGGTGGTCGCCAGAGGTGGAGGTGGCTTCTCATAGTAGGGTCTTCAAAGGAAGTGGGGTGGAGCTCCATTGAAGAGGAAGGAATGACCTTGATGATAGAGGAGAGGACCTCCATGACGGAGGGAGAGGGTATAGATCCAAAGTTCTAA 609 0.4433 MRTPCCDKENINKGAWSKQEDQKLIDYIQVHGEGCWGSIPKAAAGLHRCGKSCRLRWLNYLRPDIKRGIFAQDEEDLIIKLHALLGNRWALIAGRLPGRTDNEVKNHWNSHIRRKLIKMGIDPNNHKLHKEKIMGLAYRHIMAVRAYIGGGGGLGGRQRWRWLLIVGSSKEVGWSSIEEEGMTLMIEERTSMTEGEGIDPKF 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03196 202 Gene3D - 13 66 - -
Tsu05g03196 202 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 131 - -
Tsu05g03196 202 CDD SANT 72 112 IPR001005 -
Tsu05g03196 202 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tsu05g03196 202 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Tsu05g03196 202 Pfam Myb-like DNA-binding domain 13 61 IPR001005 -
Tsu05g03196 202 Pfam Myb-like DNA-binding domain 70 111 IPR001005 -
Tsu05g03196 202 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Tsu05g03196 202 CDD SANT 15 61 IPR001005 -
Tsu05g03196 202 Gene3D - 69 134 - -
Tsu05g03196 202 SMART sant 12 63 IPR001005 -
Tsu05g03196 202 SMART sant 66 114 IPR001005 -
Tsu05g03196 202 ProSiteProfiles Myb-like domain profile. 8 61 IPR001005 -
Tsu05g03196 202 PANTHER MYB TRANSCRIPTION FACTOR 2 131 - -
Tsu05g03196 202 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03196 Tsu-Chr5 43169667 43174824 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03196 2 131 MYB Transcription Factor Family AT4G38620 70.000 4.99e-68 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu05g03196 Myb_DNA-binding 2.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03196 K09422 - gmx:100793444 259.996