Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03192 ATGGCTAATAACAAACGTGAAATCATCCAAGAGGATGAAACTTCAAGTGTTGAAGAAGGCAACCCTAACATCATGCAACTTTGTTGTTCATCAAATCAAACTATAACATTGATACAAAAGGTTATTGCAGAAATCATtggaacatattttcttgtatttGCTGGGTGTGGTTCTGTAGTAGTGAACAAGATCTATGGTTCTGTCACATTTCCAGGGGTTTGTATAACTTGGGGACTAATTGTAATGGTCATGTGTTACTCTGTTGGTCATATCTCCGGCGGCCATTTCAATCCGGCTGTTACAATTACTTGGACCCTCTTTCGCCGAATCTCAATTAAAGAGGTAGCTCCGTTGTACATTTTCGCTCAGTTGCTCGGGGCGACACTTGCAAGTGGCACATTATCTATGATGTTTGATATCTCGTCCAAAACTTATTTTGGAACGGTACCGGTTGGATCAAATGGTCAATCTTTAGTTGCTGAAATCATCACCAGTTTTCTCTTGATGTTTGTCATTTCGGCAGTTTCCACAGACGAAAGAGCGgtgaatgACTTGGCAGGTGTTGCAGTTGGAATGACTataatgttaaatatgtttattgCTGGGCCTGTATCAGGAGGTTCTATGAATCCAGCAAGAAGTATTGGTCCTGCACTTGTTGTACATGTTTACAAAGGGTTATGGATATATGTAGTTGGTCCAATTGTCGGCGCCATAGCCGGAGCAATTGCCTATAACCTTCTTAGATCCGTAGGCAAGCCGAATTCAGAGTTCGCCGGAGCGGAGCCGTTGAGGAATATAGTTGTAGGTTGA 813 0.4034 MANNKREIIQEDETSSVEEGNPNIMQLCCSSNQTITLIQKVIAEIIGTYFLVFAGCGSVVVNKIYGSVTFPGVCITWGLIVMVMCYSVGHISGGHFNPAVTITWTLFRRISIKEVAPLYIFAQLLGATLASGTLSMMFDISSKTYFGTVPVGSNGQSLVAEIITSFLLMFVISAVSTDERAVNDLAGVAVGMTIMLNMFIAGPVSGGSMNPARSIGPALVVHVYKGLWIYVVGPIVGAIAGAIAYNLLRSVGKPNSEFAGAEPLRNIVVG 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03192 270 SUPERFAMILY Aquaporin-like 35 253 IPR023271 -
Tsu05g03192 270 TIGRFAM MIP: MIP family channel proteins 43 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu05g03192 270 PRINTS Major intrinsic protein family signature 228 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu05g03192 270 PRINTS Major intrinsic protein family signature 115 134 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu05g03192 270 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu05g03192 270 PRINTS Major intrinsic protein family signature 191 213 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu05g03192 270 PRINTS Major intrinsic protein family signature 160 178 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu05g03192 270 PRINTS Major intrinsic protein family signature 77 101 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu05g03192 270 PANTHER AQUAPORIN NIP2-1 7 257 IPR034294 -
Tsu05g03192 270 Pfam Major intrinsic protein 33 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu05g03192 270 CDD MIP 39 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu05g03192 270 PANTHER AQUAPORIN NIP4-1-RELATED 7 257 - -
Tsu05g03192 270 Gene3D Glycerol uptake facilitator protein. 1 257 IPR023271 -
Tsu05g03192 270 ProSitePatterns MIP family signature. 95 103 IPR022357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03192 Tsu-Chr5 43131289 43133283 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03192 7 267 Major Intrinsic Protein MIP AT5G37820 58.209 1.30e-107 312
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03192 K09874 - gmx:100803763 361.688