Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03191 ATGGCACTAACTAACAACAACATTCTACATAGTTCAATCCTAAGCAACAAGTTTCAATCTTGTGTTTTTGATGAAACTATTATCATGTCTCATAAAAAATCTatgaatgaagatgaagatggttCACAAAGCACTAATGGATTAAGCAATGATTCAGCTTCAGCTTCTGCTTCTGCTTCTGCCACTACAAATTCTACTACTATTTGTGGTAGTAGCAAAAAAGGGTATGTTTATAACAACACAAGTTATGAacttgatgaagaagaatctttGATTAATTTCAAAGGCAATGATGAGTACTATAATAATCTCATGCAAGGTAGTGAATCTTTGCTTAGTTTTCAGCAAAGCTGGAATATGGTCTTTAATGAGAACAATATGCAACAATGGAATCATGTTAGTCCTAATTTCAATAACTTTGAAACTTCTAGTGGATCCTATGGATCCATATTCAATAGTACAAAAGAGAAGCAAAATGGTGAAAGTTCATGTGGGTGGTTATATTCTGAACCAAATGTCccttgtgatgatgatgatagccTAAGAAGGGAGTCGGAAACACATGAGTTGGTCTTGAAGAAGCGGCCTTCGATGGGAGAGAATATGCAACCTGCCAATGCCAAGAAACCATGCACAAATgcaagtaaaaaagaaaaacttaagtCAAATCCATCTAAGGATCCTCAAAGTGTTGCTGCCAAGaatagaagagagagaataagTGAGAGGCTCAAGATCTTACAAGAACTTGTACCAAACGGTTCCAAGGTTGATTTGGTTACCATGTTGGAAAAAGCAATTAGTTATGTTAAGTTTCTTCAGTTACAAGTCAAGGTGTTGGCAGCTGATGAATTTTGGCCAGTTAATGGTGGAAAAGCTCCTGACATTGGTCAAGTAAAGCAAGCAATTGATGCAATTCTTTCATCTCcaagatga 936 0.3216 MALTNNNILHSSILSNKFQSCVFDETIIMSHKKSMNEDEDGSQSTNGLSNDSASASASASATTNSTTICGSSKKGYVYNNTSYELDEEESLINFKGNDEYYNNLMQGSESLLSFQQSWNMVFNENNMQQWNHVSPNFNNFETSSGSYGSIFNSTKEKQNGESSCGWLYSEPNVPCDDDDSLRRESETHELVLKKRPSMGENMQPANAKKPCTNASKKEKLKSNPSKDPQSVAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKVLAADEFWPVNGGKAPDIGQVKQAIDAILSSPR 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03191 311 MobiDBLite consensus disorder prediction 175 195 - -
Tsu05g03191 311 Pfam Helix-loop-helix DNA-binding domain 234 274 IPR011598 GO:0046983
Tsu05g03191 311 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 32 309 - -
Tsu05g03191 311 MobiDBLite consensus disorder prediction 175 236 - -
Tsu05g03191 311 MobiDBLite consensus disorder prediction 40 57 - -
Tsu05g03191 311 CDD bHLH_AtIND_like 225 287 - -
Tsu05g03191 311 SMART finulus 230 279 IPR011598 GO:0046983
Tsu05g03191 311 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 32 309 - -
Tsu05g03191 311 MobiDBLite consensus disorder prediction 34 57 - -
Tsu05g03191 311 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 224 273 IPR011598 GO:0046983
Tsu05g03191 311 Gene3D - 218 281 IPR036638 GO:0046983
Tsu05g03191 311 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 224 282 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03191 Tsu-Chr5 43118617 43120667 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03191 74 309 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G37800 46.988 4.24e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu05g03191 HLH 1.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03191 - - gmx:106795957 360.147